Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   LXM91_RS07640 Genome accession   NZ_CP090477
Coordinates   1490144..1491166 (+) Length   340 a.a.
NCBI ID   WP_007409697.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain W0101     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1485144..1496166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM91_RS07605 (LXM91_07605) - 1485504..1485743 (+) 240 WP_003154475.1 YlbE-like family protein -
  LXM91_RS07610 (LXM91_07610) ylbF 1485814..1486263 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  LXM91_RS07615 (LXM91_07615) - 1486322..1486594 (+) 273 WP_003154470.1 YlbG family protein -
  LXM91_RS07620 (LXM91_07620) rsmD 1486893..1487447 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LXM91_RS07625 (LXM91_07625) coaD 1487452..1487934 (+) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  LXM91_RS07630 (LXM91_07630) ylbJ 1487953..1489179 (-) 1227 WP_003154466.1 sporulation integral membrane protein YlbJ -
  LXM91_RS07635 (LXM91_07635) - 1489359..1490138 (+) 780 WP_007409696.1 patatin family protein -
  LXM91_RS07640 (LXM91_07640) sepM 1490144..1491166 (+) 1023 WP_007409697.1 SepM family pheromone-processing serine protease Regulator
  LXM91_RS07645 (LXM91_07645) - 1491185..1492432 (-) 1248 WP_015417417.1 nucleotidyltransferase -
  LXM91_RS07650 (LXM91_07650) - 1492641..1493159 (+) 519 WP_007409699.1 DUF177 domain-containing protein -
  LXM91_RS07655 (LXM91_07655) rpmF 1493181..1493360 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  LXM91_RS07660 (LXM91_07660) gerR 1493518..1494093 (+) 576 WP_003154450.1 sporulation-specific transcriptional regulator GerR -
  LXM91_RS07665 (LXM91_07665) - 1494134..1494616 (-) 483 WP_007409700.1 N-acetyltransferase -
  LXM91_RS07670 (LXM91_07670) - 1494779..1495660 (+) 882 WP_039251565.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37448.99 Da        Isoelectric Point: 7.3837

>NTDB_id=554248 LXM91_RS07640 WP_007409697.1 1490144..1491166(+) (sepM) [Bacillus amyloliquefaciens strain W0101]
MKAKHFRWVFIILILLIAVTFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYEEIV
PDESIKEEGESDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIYASSVVSDMPAKGKIEVGDKIISADGKTYES
AEKLIDYISSKKAGEKVTFHIERDTKEKTVDIVLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDQLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=554248 LXM91_RS07640 WP_007409697.1 1490144..1491166(+) (sepM) [Bacillus amyloliquefaciens strain W0101]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATCGCTGTTACATTTATTAAGCTTCCGTATTA
CATCACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAAGTGCATCCTTACGAAGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAATCGGACTCGGATTATATGAAGCGCCAGCTGCAAATGATGAAAAGCTCCCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGGAAACAGGTAAAATACTCATTTAACGGCATTTATGCCAGTTCAG
TCGTCTCTGACATGCCGGCAAAAGGAAAAATAGAGGTCGGTGATAAAATTATCAGCGCGGACGGGAAAACATACGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTTCACATTGAACGGGACACGAAAGA
AAAGACCGTTGACATTGTGCTGAAATCATTCCCGGACGACCCGAAAAGAGCGGGAATCGGTGTCGCATTATATACGGACC
GGAACGTGAAAGTGAAGCCGGATCTTCATTTCAGCATTGAAAACATCGGCGGGCCTTCTGCGGGTCTCATGATGTCTTTA
GAAATTTATAACCAGCTGACAAAACCTGACGAAACAAAAGGCTATAATATAGCCGGGACGGGGACAATCGACGTGGACGG
CAAAGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ATCAAAACGGAGCTGAAAATTCTGATTACAAAAATGCGGTAAAAACGGCGAAAGCAATCAAGTCCGATATGAAGATCGTC
CCTGTCGACACCATGCAGGACGCACTTGACTATTTGGATCAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(127-193)

Peptidase family M50 (Peptidase_M50)

(99-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.953

100

0.394