Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   J6600_RS12065 Genome accession   NZ_CP072563
Coordinates   2518995..2519762 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus sp. LJBV19     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2513995..2524762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6600_RS12045 (J6600_12045) - 2514197..2515009 (-) 813 WP_017418169.1 pyruvate, water dikinase regulatory protein -
  J6600_RS12050 (J6600_12050) ccpN 2515035..2515673 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  J6600_RS12055 (J6600_12055) glyS 2515774..2517813 (-) 2040 WP_209387442.1 glycine--tRNA ligase subunit beta -
  J6600_RS12060 (J6600_12060) glyQ 2517806..2518693 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  J6600_RS12065 (J6600_12065) recO 2518995..2519762 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  J6600_RS12070 (J6600_12070) - 2519799..2519942 (-) 144 WP_007408286.1 YqzL family protein -
  J6600_RS12075 (J6600_12075) era 2520098..2521003 (-) 906 WP_007408285.1 GTPase Era -
  J6600_RS12080 (J6600_12080) - 2520984..2521394 (-) 411 WP_017418172.1 cytidine deaminase -
  J6600_RS12085 (J6600_12085) - 2521518..2521892 (-) 375 WP_209388350.1 diacylglycerol kinase family protein -
  J6600_RS12090 (J6600_12090) ybeY 2521873..2522346 (-) 474 WP_209387443.1 rRNA maturation RNase YbeY -
  J6600_RS12095 (J6600_12095) - 2522347..2524479 (-) 2133 WP_014418406.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=554242 J6600_RS12065 WP_007408287.1 2518995..2519762(-) (recO) [Bacillus sp. LJBV19]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=554242 J6600_RS12065 WP_007408287.1 2518995..2519762(-) (recO) [Bacillus sp. LJBV19]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAATCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89