Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   J6600_RS10490 Genome accession   NZ_CP072563
Coordinates   2187974..2188582 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus sp. LJBV19     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2182974..2193582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6600_RS10450 (J6600_10450) - 2183994..2184500 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  J6600_RS10455 (J6600_10455) - 2184639..2185052 (+) 414 WP_029973660.1 hypothetical protein -
  J6600_RS10460 (J6600_10460) - 2185082..2185549 (-) 468 WP_159354303.1 YppG family protein -
  J6600_RS10465 (J6600_10465) - 2185736..2185918 (+) 183 WP_003153532.1 YppF family protein -
  J6600_RS10470 (J6600_10470) - 2185957..2186325 (-) 369 WP_014418232.1 YppE family protein -
  J6600_RS10475 (J6600_10475) - 2186371..2186616 (-) 246 WP_014418233.1 DUF5446 family protein -
  J6600_RS10480 (J6600_10480) sspM 2186822..2186926 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  J6600_RS10485 (J6600_10485) - 2186970..2187932 (-) 963 WP_209387382.1 DUF2515 domain-containing protein -
  J6600_RS10490 (J6600_10490) recU 2187974..2188582 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  J6600_RS10495 (J6600_10495) - 2188621..2191404 (+) 2784 WP_209387383.1 PBP1A family penicillin-binding protein -
  J6600_RS10500 (J6600_10500) - 2191483..2191974 (-) 492 WP_012117839.1 YpoC family protein -
  J6600_RS10505 (J6600_10505) nth 2191971..2192630 (-) 660 WP_007612187.1 endonuclease III -
  J6600_RS10510 (J6600_10510) dnaD 2192649..2193347 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=554231 J6600_RS10490 WP_003153521.1 2187974..2188582(+) (recU) [Bacillus sp. LJBV19]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=554231 J6600_RS10490 WP_003153521.1 2187974..2188582(+) (recU) [Bacillus sp. LJBV19]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGATCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAACATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896