Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   J6600_RS08710 Genome accession   NZ_CP072563
Coordinates   1806845..1807279 (+) Length   144 a.a.
NCBI ID   WP_209388260.1    Uniprot ID   -
Organism   Bacillus sp. LJBV19     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1801845..1812279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6600_RS08705 (J6600_08705) - 1805345..1806556 (-) 1212 WP_061862630.1 cytochrome P450 -
  J6600_RS08710 (J6600_08710) nucA/comI 1806845..1807279 (+) 435 WP_209388260.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  J6600_RS08715 (J6600_08715) - 1807339..1808094 (+) 756 WP_003154084.1 YoaK family protein -
  J6600_RS08720 (J6600_08720) - 1808128..1808490 (-) 363 WP_007410383.1 hypothetical protein -
  J6600_RS08725 (J6600_08725) - 1808682..1810010 (-) 1329 WP_022553314.1 S8 family peptidase -
  J6600_RS08730 (J6600_08730) - 1810189..1810422 (+) 234 WP_095272140.1 hypothetical protein -
  J6600_RS08735 (J6600_08735) - 1810678..1811385 (+) 708 WP_014417828.1 poly-gamma-glutamate hydrolase family protein -
  J6600_RS08740 (J6600_08740) - 1811445..1811897 (+) 453 WP_014305039.1 OsmC family protein -
  J6600_RS08745 (J6600_08745) - 1811911..1812264 (-) 354 WP_007410379.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15494.45 Da        Isoelectric Point: 7.2418

>NTDB_id=554230 J6600_RS08710 WP_209388260.1 1806845..1807279(+) (nucA/comI) [Bacillus sp. LJBV19]
MNAFMKWAASLLLVISLQIGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=554230 J6600_RS08710 WP_209388260.1 1806845..1807279(+) (nucA/comI) [Bacillus sp. LJBV19]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGATCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCAGGGTTTGACCGTGATGAATGGCCCATGGCAGTTTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATACT
CCGACGGCACGAGAGTACTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486