Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J6600_RS08155 Genome accession   NZ_CP072563
Coordinates   1631610..1632509 (+) Length   299 a.a.
NCBI ID   WP_209388233.1    Uniprot ID   -
Organism   Bacillus sp. LJBV19     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1626610..1637509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6600_RS08135 (J6600_08135) - 1627301..1629004 (+) 1704 WP_209388231.1 glycosyl transferase -
  J6600_RS08140 (J6600_08140) - 1629001..1629282 (+) 282 WP_014417762.1 FlhB-like flagellar biosynthesis protein -
  J6600_RS08145 (J6600_08145) sucC 1629457..1630614 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  J6600_RS08150 (J6600_08150) sucD 1630643..1631545 (+) 903 WP_209388232.1 succinate--CoA ligase subunit alpha -
  J6600_RS08155 (J6600_08155) dprA 1631610..1632509 (+) 900 WP_209388233.1 DNA-processing protein DprA Machinery gene
  J6600_RS08160 (J6600_08160) topA 1632691..1634766 (+) 2076 WP_014417765.1 type I DNA topoisomerase -
  J6600_RS08165 (J6600_08165) trmFO 1634831..1636138 (+) 1308 WP_209388234.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  J6600_RS08170 (J6600_08170) xerC 1636208..1637125 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32876.12 Da        Isoelectric Point: 8.4593

>NTDB_id=554226 J6600_RS08155 WP_209388233.1 1631610..1632509(+) (dprA) [Bacillus sp. LJBV19]
MDQALRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKEPELDEVLSDYRRKGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=554226 J6600_RS08155 WP_209388233.1 1631610..1632509(+) (dprA) [Bacillus sp. LJBV19]
TTGGATCAAGCATTGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGAACCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCAAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGTTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCATATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365