Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   J6600_RS07295 Genome accession   NZ_CP072563
Coordinates   1415178..1415462 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus sp. LJBV19     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1410178..1420462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6600_RS07275 (J6600_07275) - 1411424..1412332 (+) 909 WP_209388187.1 ketopantoate reductase family protein -
  J6600_RS07280 (J6600_07280) - 1412361..1413593 (-) 1233 WP_007409644.1 aminopeptidase -
  J6600_RS07285 (J6600_07285) - 1413694..1413828 (-) 135 WP_003154559.1 protein YkpC -
  J6600_RS07290 (J6600_07290) mreBH 1413900..1414907 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  J6600_RS07295 (J6600_07295) abrB 1415178..1415462 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  J6600_RS07300 (J6600_07300) - 1415635..1416939 (+) 1305 WP_095271806.1 ATP-binding protein -
  J6600_RS07305 (J6600_07305) - 1416941..1417768 (+) 828 WP_014417635.1 gamma-glutamylcyclotransferase family protein -
  J6600_RS07310 (J6600_07310) ktrC 1417809..1418474 (+) 666 WP_100261756.1 Ktr system potassium transporter KtrC -
  J6600_RS07315 (J6600_07315) ade 1418623..1420356 (+) 1734 WP_209388188.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=554225 J6600_RS07295 WP_024085249.1 1415178..1415462(+) (abrB) [Bacillus sp. LJBV19]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=554225 J6600_RS07295 WP_024085249.1 1415178..1415462(+) (abrB) [Bacillus sp. LJBV19]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543