Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   J6600_RS07085 Genome accession   NZ_CP072563
Coordinates   1378817..1379281 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus sp. LJBV19     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1373817..1384281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6600_RS07065 (J6600_07065) - 1374298..1376118 (+) 1821 WP_021493759.1 PAS domain-containing protein -
  J6600_RS07070 (J6600_07070) - 1376143..1377312 (-) 1170 WP_007611083.1 aminotransferase A -
  J6600_RS07075 (J6600_07075) - 1377513..1377674 (-) 162 WP_007409608.1 hypothetical protein -
  J6600_RS07080 (J6600_07080) cheV 1377863..1378774 (+) 912 WP_014417604.1 chemotaxis protein CheV -
  J6600_RS07085 (J6600_07085) kre 1378817..1379281 (-) 465 WP_003154622.1 YkyB family protein Regulator
  J6600_RS07090 (J6600_07090) - 1379404..1380696 (-) 1293 WP_014417606.1 MFS transporter -
  J6600_RS07095 (J6600_07095) - 1380772..1381266 (-) 495 WP_088056573.1 L,D-transpeptidase family protein -
  J6600_RS07100 (J6600_07100) - 1381341..1382204 (-) 864 WP_209388181.1 metallophosphoesterase -
  J6600_RS07105 (J6600_07105) fadH 1382348..1383112 (+) 765 WP_014417609.1 2,4-dienoyl-CoA reductase -
  J6600_RS07110 (J6600_07110) - 1383226..1383774 (+) 549 WP_014417610.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=554223 J6600_RS07085 WP_003154622.1 1378817..1379281(-) (kre) [Bacillus sp. LJBV19]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=554223 J6600_RS07085 WP_003154622.1 1378817..1379281(-) (kre) [Bacillus sp. LJBV19]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929