Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   LXM91_RS02220 Genome accession   NZ_CP090477
Coordinates   435835..436269 (+) Length   144 a.a.
NCBI ID   WP_039252737.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain W0101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 430835..441269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM91_RS02190 (LXM91_02190) - 431506..432366 (+) 861 WP_020955337.1 SDR family oxidoreductase -
  LXM91_RS02195 (LXM91_02195) - 432379..432882 (+) 504 WP_025284250.1 D-lyxose/D-mannose family sugar isomerase -
  LXM91_RS02200 (LXM91_02200) - 432970..433593 (+) 624 WP_039252743.1 GNAT family protein -
  LXM91_RS02205 (LXM91_02205) - 433600..434022 (+) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  LXM91_RS02210 (LXM91_02210) - 434521..435330 (+) 810 WP_039252740.1 lipid II flippase Amj family protein -
  LXM91_RS02215 (LXM91_02215) - 435368..435658 (-) 291 WP_003156265.1 DUF3817 domain-containing protein -
  LXM91_RS02220 (LXM91_02220) lrpC 435835..436269 (+) 435 WP_039252737.1 Lrp/AsnC family transcriptional regulator Machinery gene
  LXM91_RS02225 (LXM91_02225) - 436333..438519 (+) 2187 WP_039254980.1 DNA topoisomerase III -
  LXM91_RS02230 (LXM91_02230) - 438753..439838 (+) 1086 WP_039252733.1 hypothetical protein -
  LXM91_RS02235 (LXM91_02235) - 439819..440667 (+) 849 WP_031378661.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16464.12 Da        Isoelectric Point: 9.0770

>NTDB_id=554210 LXM91_RS02220 WP_039252737.1 435835..436269(+) (lrpC) [Bacillus amyloliquefaciens strain W0101]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKMNADSLETIEHFINRTSPYAQTVTHVIFSEIDTKSVLN

Nucleotide


Download         Length: 435 bp        

>NTDB_id=554210 LXM91_RS02220 WP_039252737.1 435835..436269(+) (lrpC) [Bacillus amyloliquefaciens strain W0101]
ATGAAACTAGATAATGTGGATCTGAGCATCATCAAAGAGCTCCAAAGGGACAGCCGCCTGTCCATGCGGGAACTGGGCAG
AAAAATCAAATTGTCAGCTCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCTGTTTCCTGCATTGTCGAAGCGACAGTGAAAAACGGAAAATACGATCAA
TTTAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
GAACGCGGACAGTCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAGCGTCCTCAATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

80.142

97.917

0.785