Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   J6600_RS01755 Genome accession   NZ_CP072563
Coordinates   331590..332027 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus sp. LJBV19     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 326590..337027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6600_RS01730 (J6600_01730) - 327610..328746 (+) 1137 WP_209387865.1 zinc-dependent alcohol dehydrogenase -
  J6600_RS01735 (J6600_01735) - 328761..329195 (+) 435 WP_021494203.1 RDD family protein -
  J6600_RS01740 (J6600_01740) - 329267..329590 (+) 324 WP_007409357.1 YckD family protein -
  J6600_RS01745 (J6600_01745) - 329694..331130 (+) 1437 WP_209387866.1 family 1 glycosylhydrolase -
  J6600_RS01750 (J6600_01750) nin/comJ 331171..331569 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  J6600_RS01755 (J6600_01755) nucA/comI 331590..332027 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  J6600_RS01760 (J6600_01760) hxlB 332358..332915 (-) 558 WP_209387867.1 6-phospho-3-hexuloisomerase -
  J6600_RS01765 (J6600_01765) hxlA 332912..333547 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  J6600_RS01770 (J6600_01770) - 333779..334141 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=554202 J6600_RS01755 WP_003156588.1 331590..332027(-) (nucA/comI) [Bacillus sp. LJBV19]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=554202 J6600_RS01755 WP_003156588.1 331590..332027(-) (nucA/comI) [Bacillus sp. LJBV19]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641