Detailed information NTG0554198

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: LXM91_RS01510
• Genome accession: NZ_CP090477
• Coordinates: 271059..272180 (+)
• Length: 373 a.a.
• NCBI ID: WP_033575143.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain W0101
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 266059..277180

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LXM91_RS01490 (LXM91_01490)	-	266368..267363 (-)	996	WP_015416740.1	DUF5105 domain-containing protein	-
LXM91_RS01495 (LXM91_01495)	-	267490..268890 (+)	1401	WP_039252871.1	YcdB/YcdC domain-containing protein	-
LXM91_RS01500 (LXM91_01500)	-	269091..270449 (+)	1359	WP_015416742.1	YcdB/YcdC domain-containing protein	-
LXM91_RS01505 (LXM91_01505)	-	270446..270949 (-)	504	WP_015416743.1	M15 family metallopeptidase	-
LXM91_RS01510 (LXM91_01510)	rapF	271059..272180 (+)	1122	WP_033575143.1	tetratricopeptide repeat protein	Regulator
LXM91_RS01515 (LXM91_01515)	-	272296..273075 (+)	780	WP_039252868.1	glucose 1-dehydrogenase	-
LXM91_RS01520 (LXM91_01520)	-	273159..274838 (+)	1680	WP_039252865.1	alpha-glucosidase	-
LXM91_RS01525 (LXM91_01525)	-	275023..275982 (+)	960	WP_031378693.1	metal ABC transporter substrate-binding protein	-
LXM91_RS01530 (LXM91_01530)	-	276037..276732 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.49 Da
• Isoelectric Point: 5.0032

>NTDB_id=554198 LXM91_RS01510 WP_033575143.1 271059..272180(+) (rapF) [Bacillus amyloliquefaciens strain W0101]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=554198 LXM91_RS01510 WP_033575143.1 271059..272180(+) (rapF) [Bacillus amyloliquefaciens strain W0101]
ATGAAATCCAAAATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCCCTGGAATACCTCGAATGCGCCTTGGAACACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAAGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATCCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402