Detailed information NTG0554177

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LZ684_RS21845
• Genome accession: NZ_CP090456
• Coordinates: 4556930..4557955 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain B379
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4551930..4562955

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ684_RS21825 (LZ684_21825)	metJ	4552991..4553308 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LZ684_RS21830 (LZ684_21830)	yiiX	4553492..4554100 (+)	609	WP_086173877.1	YiiX family permuted papain-like enzyme	-
LZ684_RS21835 (LZ684_21835)	rpmE	4554161..4554373 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LZ684_RS21840 (LZ684_21840)	priA	4554576..4556774 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
LZ684_RS21845 (LZ684_21845)	cytR	4556930..4557955 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LZ684_RS21850 (LZ684_21850)	ftsN	4558047..4559006 (+)	960	WP_115725380.1	cell division protein FtsN	-
LZ684_RS21855 (LZ684_21855)	hslV	4559099..4559629 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LZ684_RS21860 (LZ684_21860)	hslU	4559639..4560970 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LZ684_RS21865 (LZ684_21865)	menA	4561037..4561963 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LZ684_RS21870 (LZ684_21870)	rraA	4562056..4562541 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LZ684_RS21875 (LZ684_21875)	zapB	4562626..4562871 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=554177 LZ684_RS21845 WP_000644904.1 4556930..4557955(+) (cytR) [Escherichia coli strain B379]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=554177 LZ684_RS21845 WP_000644904.1 4556930..4557955(+) (cytR) [Escherichia coli strain B379]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628