Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LZ684_RS09005 Genome accession   NZ_CP090456
Coordinates   1902773..1904200 (-) Length   475 a.a.
NCBI ID   WP_001618667.1    Uniprot ID   -
Organism   Escherichia coli strain B379     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1897773..1909200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ684_RS08975 (LZ684_08975) yeeZ 1897828..1898652 (+) 825 WP_001618670.1 SDR family oxidoreductase -
  LZ684_RS08980 (LZ684_08980) yeeY 1898698..1899627 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  LZ684_RS08985 (LZ684_08985) yoeI 1899842..1899904 (+) 63 WP_010723108.1 membrane protein YoeI -
  LZ684_RS08990 (LZ684_08990) plaP 1899894..1901252 (+) 1359 WP_001618669.1 putrescine/proton symporter PlaP -
  LZ684_RS08995 (LZ684_08995) tsuA 1901431..1902489 (+) 1059 WP_024193414.1 thiosulfate utilization transporter TsuA/YeeE -
  LZ684_RS09000 (LZ684_09000) tsuB 1902503..1902730 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LZ684_RS09005 (LZ684_09005) sbcB 1902773..1904200 (-) 1428 WP_001618667.1 exodeoxyribonuclease I Machinery gene
  LZ684_RS09010 (LZ684_09010) dacD 1904409..1905575 (+) 1167 WP_001618666.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LZ684_RS09015 (LZ684_09015) sbmC 1905694..1906167 (+) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  LZ684_RS09020 (LZ684_09020) yeeA 1906365..1907423 (+) 1059 WP_001200891.1 FUSC family protein -
  LZ684_RS09025 (LZ684_09025) tmaR 1907595..1907924 (+) 330 WP_000450409.1 DUF496 family protein -
  LZ684_RS09030 (LZ684_09030) - 1908025..1908207 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  LZ684_RS09035 (LZ684_09035) - 1908279..1908407 (+) 129 Protein_1772 transposase domain-containing protein -
  LZ684_RS09040 (LZ684_09040) - 1908696..1908788 (-) 93 Protein_1773 DUF957 domain-containing protein -
  LZ684_RS09045 (LZ684_09045) yeeW 1908822..1909016 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54514.84 Da        Isoelectric Point: 5.4700

>NTDB_id=554140 LZ684_RS09005 WP_001618667.1 1902773..1904200(-) (sbcB) [Escherichia coli strain B379]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=554140 LZ684_RS09005 WP_001618667.1 1902773..1904200(-) (sbcB) [Escherichia coli strain B379]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585