Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   J7649_RS11845 Genome accession   NZ_CP072549
Coordinates   2521934..2524156 (-) Length   740 a.a.
NCBI ID   WP_219308216.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain H7     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2516934..2529156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7649_RS11820 (J7649_11820) - 2517135..2517392 (-) 258 WP_004278574.1 YdcH family protein -
  J7649_RS11825 (J7649_11825) - 2517482..2517811 (-) 330 WP_219308212.1 chaperone modulator CbpM -
  J7649_RS11830 (J7649_11830) - 2518296..2518757 (-) 462 WP_005102907.1 DUF2147 domain-containing protein -
  J7649_RS11835 (J7649_11835) - 2519079..2519954 (-) 876 WP_004647344.1 Hsp33 family molecular chaperone HslO -
  J7649_RS11840 (J7649_11840) - 2520005..2521858 (-) 1854 WP_219308214.1 cation:proton antiporter -
  J7649_RS11845 (J7649_11845) priA 2521934..2524156 (-) 2223 WP_219308216.1 primosomal protein N' Machinery gene
  J7649_RS11850 (J7649_11850) gspF 2524307..2525512 (+) 1206 WP_004729358.1 type II secretion system inner membrane protein GspF -
  J7649_RS11855 (J7649_11855) gspG 2525592..2526026 (+) 435 WP_219308219.1 type II secretion system major pseudopilin GspG -
  J7649_RS11860 (J7649_11860) - 2526311..2526646 (+) 336 WP_219308221.1 hypothetical protein -
  J7649_RS11865 (J7649_11865) lnt 2526802..2528361 (-) 1560 WP_219308223.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84219.32 Da        Isoelectric Point: 8.6437

>NTDB_id=554138 J7649_RS11845 WP_219308216.1 2521934..2524156(-) (priA) [Acinetobacter lwoffii strain H7]
MQNSHTDLSPIYRVRVAVPVHVFDCFDYTMSAEQFKQAQIGARVLVSFGRQNLVGVIIEKLSADTPLDPRFKLKAVTELL
DERAIIDSKVLSLLTWSAQYYQFPIGEVVHSALPTLLRQGKPYNLLARTWKLLDPDAEAKVRRSDKQQEAYRILKLHPVG
TTENVLNMAGIETATLKALEKKEICACVLEPQDFSPQPMQLAQMPLTANPEQKHAVEQVLKYRNQYQAFLLDGLTGSGKT
EVYLQIMEQVLKQSKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQSAETGKASIVLGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCLVILGSATPSIDSYALVEHGKMQVLELNQRAGTALMPKIHI
LDLKVAQKKHGISLQLIQDIKKRLEKKEQVLIFLNRRGYAPVLLCGSCGWQAQCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHQELVTLGMGTGKVEEHLNELFPDFEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVNENYRVFAQQTLKERQMARM
PPYRYAILIRCESKDQAQNTEFLQKHAALLRQYPDLALDIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYVRSWWQNM
LQDKPSSMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=554138 J7649_RS11845 WP_219308216.1 2521934..2524156(-) (priA) [Acinetobacter lwoffii strain H7]
ATGCAAAATTCTCACACCGATTTAAGTCCAATTTATCGCGTACGCGTTGCTGTACCTGTGCATGTATTTGATTGTTTTGA
TTACACGATGAGTGCAGAACAATTTAAACAGGCGCAGATTGGCGCACGTGTACTGGTGTCGTTTGGTCGGCAGAATCTGG
TCGGGGTGATTATCGAAAAACTCTCGGCAGACACCCCTCTCGATCCACGCTTTAAGCTTAAAGCTGTAACCGAACTGCTC
GATGAACGCGCCATTATAGATAGCAAAGTTTTAAGTTTGTTGACATGGTCAGCGCAATATTACCAGTTCCCGATCGGTGA
AGTCGTCCACAGTGCCCTGCCGACCCTGTTGCGTCAGGGTAAGCCTTATAACCTGCTGGCCCGTACCTGGAAATTGCTAG
ACCCTGATGCCGAGGCCAAAGTACGTCGTTCGGACAAGCAGCAGGAAGCCTACCGGATTTTAAAACTGCACCCGGTCGGG
ACTACTGAAAATGTGCTGAATATGGCCGGGATTGAAACCGCGACCTTAAAAGCACTGGAGAAAAAAGAGATTTGCGCCTG
TGTACTGGAGCCACAAGATTTCAGCCCACAACCAATGCAATTGGCACAGATGCCGCTGACCGCCAATCCTGAACAAAAAC
ATGCTGTCGAACAAGTATTAAAATATCGCAATCAATATCAGGCTTTTTTACTGGATGGTCTGACCGGCAGCGGTAAAACT
GAAGTGTATTTGCAGATCATGGAACAGGTACTGAAACAGAGCAAACAGGTGCTAGTGCTGGTGCCGGAAATCGGCCTGAC
GCCGCAAACCATCAGCCGTTTTCAGTCCCGTTTTCATTGCCATATTGCGCTGCTGCATTCCGGGCTGAATGATTCCAAAC
GGCTACAAGCCTGGCAGTCGGCAGAAACTGGCAAAGCCTCAATTGTGCTTGGTACACGTTCCGCCATTTATACGCCAATG
CCGAATCTGGGCCTGATCATTCTGGATGAAGAACATGACCTGTCCTTTAAACAGCAGGAAGGCTTCCGCTATCATGCCCG
AGATGTCGCCCTGTACCGCGGCCATTTACAGCAATGTCTGGTAATCTTAGGGTCAGCCACACCAAGTATTGACAGTTATG
CGCTGGTGGAACATGGCAAGATGCAGGTGCTGGAGCTGAATCAACGTGCCGGCACGGCCTTGATGCCCAAAATCCATATT
CTGGATTTAAAAGTTGCGCAAAAAAAGCATGGGATTAGCCTTCAACTGATTCAGGACATCAAAAAGCGCCTGGAGAAAAA
AGAACAGGTGCTGATTTTTTTAAACCGCCGTGGCTATGCTCCCGTCCTGCTGTGTGGCAGCTGTGGTTGGCAGGCGCAAT
GTCCGCACTGTGATGCCAACTTCACTGTACACCGTCAGCCTTATCAGCATCTGCATTGCCATCACTGCGGCACTATTCAC
CGCATGCCGGAACACTGCCCGCAATGTCAGCATCAGGAACTGGTTACACTGGGTATGGGCACCGGCAAAGTCGAAGAACA
TTTAAATGAGCTATTTCCGGATTTTGAGGTGATTCGGGTCGATCGCGATTCCACCAGTCGGGTCGGCAGCTGGCAAAAAA
TCTATGACAAGATTCAGAAAAGCGAACCGGCGATTCTACTCGGCACCCAGATGCTGGCCAAGGGGCATCATTTTCCTTAT
GTGACGCTGGTGGCGATTCTGGATATTGATTCCGGTCTACTGAGTGTGGACTTCCGTGCTACTGAACGGACTGCGCAACT
GATCGTGCAAGTGGCTGGCCGTGCCGGACGTGGTGAACATAAAGGCGATGTTTATCTGCAGACCCTCAGACCTGATCATG
CCCTGCTGAACACCTTAGTGAATGAAAATTATCGCGTATTTGCCCAGCAGACCTTAAAAGAACGGCAGATGGCCAGAATG
CCGCCCTACCGTTATGCCATCCTGATTCGCTGTGAATCCAAGGATCAGGCACAAAATACCGAATTCTTACAGAAACATGC
AGCACTCCTCAGGCAATATCCTGATCTGGCGCTGGACATCTGGGGACCAATTCCTGCGCCAATGGAACGTAAGGCCGGAC
GCTATCAGTCGCATATGGTGCTATTGTCAGCGGATCGTCCACGTTTGCATTACTATGTGCGTAGCTGGTGGCAAAACATG
CTGCAGGACAAACCTTCTAGCATGAAGCTCACGCTGGACATCGACCCTCAGGAACTGAGCTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

Type III restriction enzyme, res subunit (ResIII)

(209-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

70.845

99.189

0.703