Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   J7649_RS11555 Genome accession   NZ_CP072549
Coordinates   2453057..2453383 (+) Length   108 a.a.
NCBI ID   WP_026055760.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain H7     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2448057..2458383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7649_RS11530 (J7649_11530) hemC 2448740..2449663 (+) 924 WP_219308157.1 hydroxymethylbilane synthase -
  J7649_RS11535 (J7649_11535) - 2449663..2450442 (+) 780 WP_004278631.1 uroporphyrinogen-III synthase -
  J7649_RS11540 (J7649_11540) - 2450439..2451278 (+) 840 WP_004647307.1 hypothetical protein -
  J7649_RS11545 (J7649_11545) - 2451285..2452478 (+) 1194 WP_044113062.1 membrane protein -
  J7649_RS11550 (J7649_11550) - 2452487..2452915 (+) 429 WP_004729290.1 acyl-CoA thioesterase -
  J7649_RS11555 (J7649_11555) hns 2453057..2453383 (+) 327 WP_026055760.1 H-NS family nucleoid-associated regulatory protein Regulator
  J7649_RS11560 (J7649_11560) gspN 2453566..2454309 (+) 744 WP_219308159.1 type II secretion system protein N -
  J7649_RS11565 (J7649_11565) - 2454309..2455163 (+) 855 WP_219308161.1 type II secretion system protein N -
  J7649_RS11570 (J7649_11570) gspD 2455202..2457463 (+) 2262 WP_219308163.1 type II secretion system secretin GspD -
  J7649_RS11575 (J7649_11575) - 2457526..2458185 (+) 660 WP_219308165.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12318.07 Da        Isoelectric Point: 7.0196

>NTDB_id=554137 J7649_RS11555 WP_026055760.1 2453057..2453383(+) (hns) [Acinetobacter lwoffii strain H7]
MMPDITHLSVEELKRLQAEAESLIASKKDQEIEDAYQQILAVAEKVGMTVEQLLEFGASKRKKSSRKSVEPRYRSKSNPD
DTWTGRGKQPRWLVAELEKGAKLDDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=554137 J7649_RS11555 WP_026055760.1 2453057..2453383(+) (hns) [Acinetobacter lwoffii strain H7]
ATTATGCCAGATATTACGCATTTATCAGTAGAAGAGTTAAAACGTTTACAAGCAGAAGCAGAATCACTGATTGCTTCAAA
AAAAGATCAAGAGATTGAAGACGCTTATCAGCAAATCTTGGCAGTTGCCGAGAAAGTGGGTATGACAGTTGAACAGTTAC
TTGAATTTGGTGCGTCTAAACGTAAAAAATCATCACGTAAGTCGGTTGAGCCGCGTTACCGTAGCAAAAGCAATCCGGAC
GATACCTGGACTGGCCGTGGTAAACAACCGCGCTGGTTAGTGGCAGAATTGGAAAAAGGCGCAAAGCTGGACGATTTTCT
GATCTAG

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787