Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   J5X96_RS07830 Genome accession   NZ_CP072548
Coordinates   1599095..1599616 (+) Length   173 a.a.
NCBI ID   WP_209362836.1    Uniprot ID   -
Organism   Aggregatibacter sp. 2125159857     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594095..1604616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X96_RS07810 (J5X96_07810) corC 1594535..1595431 (-) 897 WP_209364797.1 CNNM family magnesium/cobalt transport protein CorC -
  J5X96_RS07815 (J5X96_07815) mepM 1595626..1597155 (-) 1530 WP_209362832.1 murein DD-endopeptidase MepM -
  J5X96_RS07820 (J5X96_07820) znuC 1597351..1598130 (+) 780 WP_209362833.1 zinc ABC transporter ATP-binding protein ZnuC -
  J5X96_RS07825 (J5X96_07825) znuB 1598135..1598920 (+) 786 WP_209362834.1 zinc ABC transporter permease subunit ZnuB -
  J5X96_RS07830 (J5X96_07830) comN 1599095..1599616 (+) 522 WP_209362836.1 type II secretion system protein Machinery gene
  J5X96_RS07835 (J5X96_07835) comO 1599603..1600346 (+) 744 WP_371812515.1 hypothetical protein Machinery gene
  J5X96_RS07840 (J5X96_07840) - 1600343..1601038 (+) 696 WP_209362837.1 DUF2572 family protein -
  J5X96_RS07845 (J5X96_07845) comQ 1601013..1601315 (+) 303 WP_209362839.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20083.18 Da        Isoelectric Point: 8.2349

>NTDB_id=554100 J5X96_RS07830 WP_209362836.1 1599095..1599616(+) (comN) [Aggregatibacter sp. 2125159857]
MQKGFTLLESLIALLVISVLLTLALPTWQYYRQQSILQKEQQKLYIFLRQIQARVENSSDIWLLIANRHQTTGRWCLTAQ
IKHDKLCDCLNPQHCPPEVSAYFYFPAFEDTLLISKRYYPFEITRLSGIRNTASTACFVLQANHQRTLFSFFNVGSLKLK
DNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=554100 J5X96_RS07830 WP_209362836.1 1599095..1599616(+) (comN) [Aggregatibacter sp. 2125159857]
ATGCAAAAGGGATTCACCTTATTGGAAAGCTTGATTGCACTGCTTGTGATAAGTGTTCTATTAACATTGGCACTTCCTAC
ATGGCAATACTACCGCCAACAATCAATTTTGCAGAAAGAGCAACAAAAGCTGTATATCTTTTTACGCCAAATTCAAGCGC
GGGTAGAAAATTCATCGGACATTTGGTTGTTAATTGCCAATCGTCATCAAACGACGGGACGTTGGTGTCTCACAGCGCAA
ATTAAGCACGATAAGCTATGTGATTGCTTAAACCCACAACATTGTCCTCCTGAAGTTTCCGCCTATTTTTATTTTCCTGC
CTTTGAAGACACTTTGTTAATCAGCAAACGCTACTACCCTTTTGAAATTACACGGTTAAGCGGCATTCGTAACACAGCGT
CCACCGCTTGTTTTGTGCTACAAGCCAACCATCAACGAACCCTCTTTTCATTTTTTAATGTGGGCAGTCTGAAATTAAAA
GATAACCAATCCTTAAGCGCTTGTGTAAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

57.396

97.688

0.561