Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   J5X96_RS07835 Genome accession   NZ_CP072548
Coordinates   1599603..1600346 (+) Length   247 a.a.
NCBI ID   WP_371812515.1    Uniprot ID   -
Organism   Aggregatibacter sp. 2125159857     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594603..1605346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X96_RS07815 (J5X96_07815) mepM 1595626..1597155 (-) 1530 WP_209362832.1 murein DD-endopeptidase MepM -
  J5X96_RS07820 (J5X96_07820) znuC 1597351..1598130 (+) 780 WP_209362833.1 zinc ABC transporter ATP-binding protein ZnuC -
  J5X96_RS07825 (J5X96_07825) znuB 1598135..1598920 (+) 786 WP_209362834.1 zinc ABC transporter permease subunit ZnuB -
  J5X96_RS07830 (J5X96_07830) comN 1599095..1599616 (+) 522 WP_209362836.1 type II secretion system protein Machinery gene
  J5X96_RS07835 (J5X96_07835) comO 1599603..1600346 (+) 744 WP_371812515.1 hypothetical protein Machinery gene
  J5X96_RS07840 (J5X96_07840) - 1600343..1601038 (+) 696 WP_209362837.1 DUF2572 family protein -
  J5X96_RS07845 (J5X96_07845) comQ 1601013..1601315 (+) 303 WP_209362839.1 DUF5374 domain-containing protein Machinery gene
  J5X96_RS07850 (J5X96_07850) recC 1601354..1604761 (+) 3408 WP_209362840.1 exodeoxyribonuclease V subunit gamma -
  J5X96_RS07855 (J5X96_07855) rimI 1604764..1605207 (-) 444 WP_209362842.1 ribosomal protein S18-alanine N-acetyltransferase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28474.76 Da        Isoelectric Point: 8.4603

>NTDB_id=554101 J5X96_RS07835 WP_371812515.1 1599603..1600346(+) (comO) [Aggregatibacter sp. 2125159857]
MMKNSMTLKQKYMSGQSLVSLMLSISLSSFLFLVILQFYSQHQQQNQEMLLRLQLQTELQRVIQLIGKDLARAGFRAVSE
KLTRNNLSFFEQPNPPAAITIAQMETENSNSCVLFFYDLNVNGCIGGQYKGNTCLVNGKNATKEIERELFGYRLNKKMVE
TRLTYKSAVKQNCSFDDCQRYTQQSACNHGGWVDLLDEKEYEITHFTFHWLAEQKGVEVRLMGNLKQNKKITYETAIVVP
LLNREEP

Nucleotide


Download         Length: 744 bp        

>NTDB_id=554101 J5X96_RS07835 WP_371812515.1 1599603..1600346(+) (comO) [Aggregatibacter sp. 2125159857]
ATGATGAAGAATAGCATGACGTTAAAACAAAAATACATGTCGGGGCAAAGCTTGGTGAGTTTAATGCTTTCGATATCCCT
TTCTTCGTTTTTATTCTTGGTGATTTTGCAGTTTTATAGCCAGCACCAACAACAAAATCAGGAAATGCTTTTGCGTCTCC
AGTTACAAACAGAGCTACAGCGTGTGATTCAGCTCATCGGAAAAGATTTGGCGCGTGCCGGGTTTCGGGCGGTGAGCGAG
AAATTAACCCGAAACAATTTGTCCTTCTTTGAACAACCGAATCCGCCTGCGGCAATCACTATCGCGCAAATGGAGACAGA
AAATAGCAATAGTTGTGTTCTCTTTTTCTACGATCTGAATGTGAATGGCTGCATAGGCGGACAATACAAAGGCAACACCT
GTCTGGTGAACGGAAAAAATGCCACCAAAGAAATTGAACGTGAATTATTTGGTTATCGACTCAATAAGAAAATGGTAGAA
ACCCGTTTAACCTATAAAAGTGCGGTCAAACAAAATTGCAGTTTTGACGATTGCCAACGTTATACTCAACAATCTGCCTG
CAATCACGGTGGTTGGGTAGATTTGTTAGATGAAAAAGAATATGAAATCACCCATTTCACTTTTCATTGGTTGGCAGAGC
AAAAAGGCGTTGAAGTACGTTTAATGGGAAATTTAAAGCAGAATAAAAAAATCACCTACGAAACCGCCATCGTTGTGCCC
TTATTAAACCGAGAAGAACCATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

56.132

85.83

0.482