Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LZ175_RS21980 Genome accession   NZ_CP090448
Coordinates   4525037..4526029 (-) Length   330 a.a.
NCBI ID   WP_077782473.1    Uniprot ID   -
Organism   Escherichia coli strain PT62     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4520037..4531029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ175_RS21970 (LZ175_21965) yieP 4522929..4523621 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  LZ175_RS21975 (LZ175_21970) mdtD 4523644..4525071 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  LZ175_RS21980 (LZ175_21975) cytR 4525037..4526029 (-) 993 WP_077782473.1 ribose operon transcriptional repressor RbsR Regulator
  LZ175_RS21985 (LZ175_21980) rbsK 4526033..4526962 (-) 930 WP_001361088.1 ribokinase -
  LZ175_RS21990 (LZ175_21985) rbsB 4527088..4527978 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  LZ175_RS21995 (LZ175_21990) rbsC 4528003..4528968 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  LZ175_RS22000 (LZ175_21995) rbsA 4528973..4530478 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  LZ175_RS22005 (LZ175_22000) rbsD 4530486..4530905 (-) 420 WP_001301979.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36626.88 Da        Isoelectric Point: 5.2141

>NTDB_id=554099 LZ175_RS21980 WP_077782473.1 4525037..4526029(-) (cytR) [Escherichia coli strain PT62]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPQRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=554099 LZ175_RS21980 WP_077782473.1 4525037..4526029(-) (cytR) [Escherichia coli strain PT62]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTACTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGGCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCGCACCCGCAGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGCTGTATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364