Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   J7886_RS15370 Genome accession   NZ_CP072539
Coordinates   3155837..3156466 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O128ac:H12 strain AW1.7     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3150837..3161466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7886_RS15355 (J7886_15350) helD 3151079..3153133 (-) 2055 WP_000420536.1 DNA helicase IV -
  J7886_RS15360 (J7886_15355) yccF 3153256..3153702 (+) 447 WP_001261235.1 YccF domain-containing protein -
  J7886_RS15365 (J7886_15360) yccS 3153712..3155874 (+) 2163 WP_000875023.1 YccS family putative transporter -
  J7886_RS15370 (J7886_15365) sxy/tfoX 3155837..3156466 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  J7886_RS15375 (J7886_15370) sulA 3156685..3157194 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  J7886_RS15380 (J7886_15375) ompA 3157551..3158603 (+) 1053 WP_001307702.1 porin OmpA -
  J7886_RS15385 (J7886_15380) matP 3158678..3159130 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  J7886_RS15390 (J7886_15385) ycbZ 3159316..3161076 (+) 1761 WP_000156516.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=554067 J7886_RS15370 WP_000839153.1 3155837..3156466(-) (sxy/tfoX) [Escherichia coli O128ac:H12 strain AW1.7]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=554067 J7886_RS15370 WP_000839153.1 3155837..3156466(-) (sxy/tfoX) [Escherichia coli O128ac:H12 strain AW1.7]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1