Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LZ175_RS08670 Genome accession   NZ_CP090448
Coordinates   1817598..1819025 (-) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain PT62     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1812598..1824025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ175_RS08640 (LZ175_08640) yeeZ 1812653..1813477 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  LZ175_RS08645 (LZ175_08645) yeeY 1813523..1814452 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  LZ175_RS08650 (LZ175_08650) yoeI 1814667..1814729 (+) 63 WP_010723108.1 membrane protein YoeI -
  LZ175_RS08655 (LZ175_08655) plaP 1814719..1816077 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LZ175_RS08660 (LZ175_08660) tsuA 1816256..1817314 (+) 1059 WP_230069303.1 thiosulfate utilization transporter TsuA/YeeE -
  LZ175_RS08665 (LZ175_08665) tsuB 1817328..1817555 (+) 228 WP_050867712.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LZ175_RS08670 (LZ175_08670) sbcB 1817598..1819025 (-) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  LZ175_RS08675 (LZ175_08675) dacD 1819234..1820400 (+) 1167 WP_050867714.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LZ175_RS08680 (LZ175_08680) sbmC 1820519..1820992 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  LZ175_RS08685 (LZ175_08685) yeeA 1821190..1822248 (+) 1059 WP_050867716.1 FUSC family protein -
  LZ175_RS08690 (LZ175_08690) tmaR 1822420..1822749 (+) 330 WP_000450409.1 DUF496 family protein -
  LZ175_RS08695 (LZ175_08695) - 1822850..1823032 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  LZ175_RS08700 (LZ175_08700) - 1823095..1823232 (+) 138 Protein_1705 transposase domain-containing protein -
  LZ175_RS08705 (LZ175_08705) - 1823521..1823613 (-) 93 Protein_1706 DUF957 domain-containing protein -
  LZ175_RS08710 (LZ175_08710) yeeW 1823647..1823841 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=554056 LZ175_RS08670 WP_000980608.1 1817598..1819025(-) (sbcB) [Escherichia coli strain PT62]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=554056 LZ175_RS08670 WP_000980608.1 1817598..1819025(-) (sbcB) [Escherichia coli strain PT62]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGGATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581