Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NY40_RS07260 Genome accession   NZ_AP014523
Coordinates   1488260..1489780 (-) Length   506 a.a.
NCBI ID   WP_041051505.1    Uniprot ID   -
Organism   Helicobacter pylori NY40     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1483260..1494780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY40_RS07250 (NY40_1472) - 1484830..1486128 (-) 1299 WP_041051502.1 restriction endonuclease subunit S -
  NY40_RS07255 (NY40_1473) - 1486175..1488235 (-) 2061 WP_041051504.1 heavy metal translocating P-type ATPase -
  NY40_RS07260 (NY40_1474) comM 1488260..1489780 (-) 1521 WP_041051505.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NY40_RS07265 (NY40_1475) def 1489786..1490310 (-) 525 WP_041051506.1 peptide deformylase -
  NY40_RS07270 (NY40_1476) clpP 1490315..1490902 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  NY40_RS07275 (NY40_1477) tig 1490925..1492280 (-) 1356 WP_041051509.1 trigger factor -
  NY40_RS07280 (NY40_1478) - 1492393..1493229 (-) 837 WP_041051511.1 outer membrane protein -
  NY40_RS07285 (NY40_1479) hpaA 1493259..1494041 (-) 783 WP_041051513.1 flagellar sheath lipoprotein HpaA -
  NY40_RS07290 (NY40_1480) moaC 1494160..1494636 (-) 477 WP_001131543.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57263.25 Da        Isoelectric Point: 8.2303

>NTDB_id=55404 NY40_RS07260 WP_041051505.1 1488260..1489780(-) (comM) [Helicobacter pylori NY40]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELDDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNFEAQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=55404 NY40_RS07260 WP_041051505.1 1488260..1489780(-) (comM) [Helicobacter pylori NY40]
ATGATCAACACGATATTTTGTGCAACCATGCAAAGGGGGGTGGCAGAAATCGTGGCCGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTGGCTAATAACTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAGA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCCTCGGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTCTTAGACATTGCCATTAAGCGCCCCCATGCTAAAG
TCATTGCGCCTAAGGCGAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGTTTTTTTGTGGAGCATTTTAAAGAA
GCGTTGGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGGA
CGATAAAGAATATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAGGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGCTATATTTTGCCTCCATTGAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGAAGCTTTAGAAACCCTCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCCTTGAGAGAGCCTTTAGAAAACAATAAATTAGTGATTTCACGAGTGCACAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTATGCGGGAATTTACTCAGCGCCACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAATTTTGAAG
CGCAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTCAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.233

100

0.972
  comM Acinetobacter baylyi ADP1

36.204

100

0.366

Multiple sequence alignment