Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   J7D37_RS01315 Genome accession   NZ_CP072526
Coordinates   279678..280004 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain DETAB-E227     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 274678..285004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D37_RS01290 (J7D37_01290) hemC 275295..276212 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  J7D37_RS01295 (J7D37_01295) - 276217..276984 (+) 768 WP_038346953.1 uroporphyrinogen-III synthase -
  J7D37_RS01300 (J7D37_01300) - 276993..277832 (+) 840 WP_002044812.1 hypothetical protein -
  J7D37_RS01305 (J7D37_01305) - 277842..279035 (+) 1194 WP_209303387.1 heme biosynthesis protein HemY -
  J7D37_RS01310 (J7D37_01310) - 279043..279483 (+) 441 WP_000661569.1 acyl-CoA thioesterase -
  J7D37_RS01315 (J7D37_01315) hns 279678..280004 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  J7D37_RS01320 (J7D37_01320) gspN 280338..281081 (+) 744 WP_038346951.1 type II secretion system protein N -
  J7D37_RS01325 (J7D37_01325) - 281081..281917 (+) 837 WP_038346950.1 type II secretion system protein N -
  J7D37_RS01330 (J7D37_01330) gspD 281959..284235 (+) 2277 WP_038346949.1 type II secretion system secretin GspD -
  J7D37_RS01335 (J7D37_01335) - 284276..284905 (+) 630 WP_000219972.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=554019 J7D37_RS01315 WP_000801427.1 279678..280004(+) (hns) [Acinetobacter baumannii strain DETAB-E227]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=554019 J7D37_RS01315 WP_000801427.1 279678..280004(+) (hns) [Acinetobacter baumannii strain DETAB-E227]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1