Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   J7W01_RS06060 Genome accession   NZ_CP072525
Coordinates   1181503..1182456 (+) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis strain YB-04     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1176503..1187456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7W01_RS06035 (J7W01_06035) argF 1178335..1179294 (+) 960 WP_003232980.1 ornithine carbamoyltransferase -
  J7W01_RS06040 (J7W01_06040) yjzC 1179380..1179559 (+) 180 WP_003245356.1 YjzC family protein -
  J7W01_RS06045 (J7W01_06045) yjzD 1179605..1179790 (-) 186 WP_003245236.1 DUF2929 domain-containing protein -
  J7W01_RS06050 (J7W01_06050) - 1180039..1180773 (+) 735 WP_003245223.1 hypothetical protein -
  J7W01_RS06055 (J7W01_06055) - 1180855..1181412 (+) 558 WP_003232974.1 hypothetical protein -
  J7W01_RS06060 (J7W01_06060) med 1181503..1182456 (+) 954 WP_003245494.1 transcriptional regulator Med Regulator
  J7W01_RS06065 (J7W01_06065) comZ 1182471..1182662 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  J7W01_RS06070 (J7W01_06070) yjzB 1182692..1182931 (-) 240 WP_003232972.1 spore coat protein YjzB -
  J7W01_RS06075 (J7W01_06075) fabH 1183096..1184034 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  J7W01_RS06080 (J7W01_06080) fabF 1184057..1185298 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  J7W01_RS06085 (J7W01_06085) yjaZ 1185374..1186159 (+) 786 WP_119899243.1 DUF2268 domain-containing protein -
  J7W01_RS06090 (J7W01_06090) appD 1186351..1187337 (+) 987 WP_033883591.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=553951 J7W01_RS06060 WP_003245494.1 1181503..1182456(+) (med) [Bacillus subtilis strain YB-04]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=553951 J7W01_RS06060 WP_003245494.1 1181503..1182456(+) (med) [Bacillus subtilis strain YB-04]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTGGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1