Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   J7W01_RS05600 Genome accession   NZ_CP072525
Coordinates   1091242..1091820 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-04     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1086242..1096820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7W01_RS05580 (J7W01_05580) hemAT 1086753..1088051 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  J7W01_RS05585 (J7W01_05585) comW 1088190..1089719 (-) 1530 WP_041851020.1 FAD-dependent oxidoreductase -
  J7W01_RS05590 (J7W01_05590) yhxC 1089831..1090688 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  J7W01_RS05595 (J7W01_05595) yhzC 1090716..1090949 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  J7W01_RS05600 (J7W01_05600) comK 1091242..1091820 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  J7W01_RS05605 (J7W01_05605) yhxD 1091867..1092766 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  J7W01_RS05610 (J7W01_05610) yhjA 1092983..1093252 (+) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  J7W01_RS05615 (J7W01_05615) yhjB 1093296..1094765 (-) 1470 WP_029317574.1 sodium:solute symporter -
  J7W01_RS05620 (J7W01_05620) yhjC 1094762..1094962 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  J7W01_RS05625 (J7W01_05625) - 1095161..1095532 (-) 372 WP_014476361.1 hypothetical protein -
  J7W01_RS05630 (J7W01_05630) yhjE 1095684..1096307 (+) 624 WP_010886465.1 VTT domain-containing protein -
  J7W01_RS05635 (J7W01_05635) lepB 1096309..1096815 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=553948 J7W01_RS05600 WP_029317573.1 1091242..1091820(+) (comK) [Bacillus subtilis strain YB-04]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=553948 J7W01_RS05600 WP_029317573.1 1091242..1091820(+) (comK) [Bacillus subtilis strain YB-04]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995