Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LZM82_RS11745 Genome accession   NZ_CP090399
Coordinates   2602472..2604469 (-) Length   665 a.a.
NCBI ID   WP_000098688.1    Uniprot ID   Q9KUP2
Organism   Vibrio cholerae strain PanChol     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2597472..2609469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZM82_RS11730 (LZM82_11730) epd 2598224..2599249 (-) 1026 WP_000946626.1 erythrose-4-phosphate dehydrogenase -
  LZM82_RS11735 (LZM82_11735) - 2599401..2601359 (-) 1959 WP_000086048.1 ligand-gated channel protein -
  LZM82_RS11740 (LZM82_11740) - 2601504..2602400 (+) 897 WP_001153529.1 LysR family transcriptional regulator -
  LZM82_RS11745 (LZM82_11745) recP/tkt 2602472..2604469 (-) 1998 WP_000098688.1 transketolase Machinery gene
  LZM82_RS11750 (LZM82_11750) metK 2604834..2605991 (+) 1158 WP_000985180.1 methionine adenosyltransferase -
  LZM82_RS11755 (LZM82_11755) - 2606113..2606601 (+) 489 WP_000251279.1 SprT family zinc-dependent metalloprotease -
  LZM82_RS11760 (LZM82_11760) xds 2606729..2607424 (+) 696 WP_000972596.1 extracellular deoxyribonuclease Dns -
  LZM82_RS11765 (LZM82_11765) rsmE 2607562..2608293 (+) 732 WP_001222501.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  LZM82_RS11770 (LZM82_11770) gshB 2608307..2609263 (+) 957 WP_000593313.1 glutathione synthase -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 71611.97 Da        Isoelectric Point: 5.6775

>NTDB_id=553920 LZM82_RS11745 WP_000098688.1 2602472..2604469(-) (recP/tkt) [Vibrio cholerae strain PanChol]
MSSRKQLANAIRALSMDGVQKANSGHPGAPMGMADIAEVLWRSHLNHNPQNPNWADRDRFVLSNGHGSMLIYSLLHLSGY
ELSIDDLKNFRQLHSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMAIAEKALAAQFNKPGHDIVDHFTYVFMGDGCLME
GISHEACSLAGTLGLGKLIAFWDDNGISIDGHVEGWFSDDTPKRFEAYGWHVIPAVDGHDADAINAAIEAAKAETSRPTL
ICTKTIIGFGSPNKAGSHDCHGAPLGNDEIKAAREFLGWEHAPFEIPADIYAAWDAKQAGASKEAAWNEKFAAYAKAYPA
EAAEYKRRVAGELPANWEAATSEIIANLQANPANIASRKASQNALEAFGKLLPEFMGGSADLAPSNLTMWSGSKSLTAED
ASGNYIHYGVREFGMTAIINGIALHGGFVPYGATFLMFMEYARNAMRMAALMKVQNIQVYTHDSIGLGEDGPTHQPVEQI
ASLRMTPNMSTWRPCDQVESAVAWKLAIERKDAPSALIFSRQNLAQQPRSAEQVANIAKGGYILKDCAGQPELILIATGS
EVELAVAAYEQLSAEGKAVRVVSMPSTDAFDKQDAAYREAVLPAAVTKRIAIEAGIADFWYKYVGFGGRIIGMTSFGESA
PAGELFKLFGFTTENVVKQAKELLA

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=553920 LZM82_RS11745 WP_000098688.1 2602472..2604469(-) (recP/tkt) [Vibrio cholerae strain PanChol]
ATGTCTTCTCGCAAACAACTTGCCAATGCTATCCGCGCCCTGAGCATGGACGGCGTTCAAAAAGCTAACTCTGGCCACCC
GGGAGCCCCAATGGGCATGGCGGATATCGCCGAAGTGCTGTGGCGTTCACACTTAAACCACAACCCACAAAACCCAAACT
GGGCTGACCGCGACCGTTTCGTACTGTCTAACGGCCACGGCTCTATGCTGATTTACTCGCTGCTACACCTGAGCGGCTAT
GAGCTGTCGATTGACGATTTGAAAAACTTCCGTCAACTACACTCCAAAACACCGGGTCACCCAGAGTACGGTTATGCACC
GGGCATCGAAACGACTACGGGCCCACTCGGCCAAGGCATCACCAATGCCGTAGGTATGGCGATTGCTGAGAAAGCACTGG
CGGCGCAGTTCAACAAACCGGGTCACGACATCGTTGACCACTTCACTTATGTGTTCATGGGTGACGGCTGTTTGATGGAA
GGTATCTCGCACGAAGCGTGTTCACTGGCGGGCACACTTGGCCTTGGCAAACTGATTGCGTTCTGGGATGACAACGGTAT
CTCTATCGACGGCCACGTGGAAGGCTGGTTCTCAGACGACACACCAAAACGTTTTGAAGCGTACGGCTGGCACGTAATCC
CAGCGGTTGATGGTCACGATGCAGACGCGATTAATGCAGCAATTGAAGCGGCGAAAGCAGAAACCTCTCGCCCAACGCTG
ATTTGTACCAAAACCATCATCGGTTTCGGCTCTCCAAACAAAGCGGGCTCACACGACTGTCACGGCGCGCCTCTGGGCAA
CGATGAAATCAAAGCTGCACGTGAATTCTTGGGTTGGGAACACGCTCCGTTTGAAATCCCAGCGGACATCTACGCAGCGT
GGGATGCAAAACAAGCAGGCGCAAGCAAAGAAGCCGCTTGGAATGAGAAATTCGCCGCTTACGCGAAAGCTTACCCAGCC
GAAGCTGCTGAATACAAACGCCGCGTAGCGGGCGAGCTGCCAGCGAATTGGGAAGCCGCAACCAGCGAGATTATCGCTAA
CCTGCAAGCTAACCCTGCCAACATCGCATCGCGTAAAGCATCACAAAATGCGCTGGAAGCGTTCGGCAAACTGCTGCCAG
AATTTATGGGTGGTTCTGCTGACTTGGCGCCTTCTAACCTCACCATGTGGTCTGGCTCTAAGTCACTGACAGCAGAAGAT
GCGTCAGGCAACTACATCCACTACGGTGTGCGTGAGTTTGGTATGACGGCCATCATCAACGGTATCGCGCTGCACGGCGG
TTTTGTCCCTTACGGTGCAACCTTCCTGATGTTTATGGAATACGCGCGTAACGCGATGCGTATGGCAGCACTGATGAAAG
TGCAAAATATCCAAGTGTACACGCATGACTCTATCGGTCTGGGTGAAGATGGCCCAACTCACCAACCAGTTGAGCAAATC
GCTTCTCTGCGTATGACACCAAACATGAGCACATGGCGCCCATGTGACCAAGTGGAATCGGCAGTGGCTTGGAAACTGGC
CATCGAGCGTAAAGATGCGCCATCTGCGCTGATTTTCTCGCGTCAAAACCTTGCGCAGCAACCACGCAGCGCAGAGCAAG
TCGCGAACATCGCTAAAGGCGGTTACATCCTGAAAGATTGTGCAGGCCAACCTGAGCTAATTCTGATTGCAACAGGCTCT
GAAGTGGAACTGGCGGTTGCCGCTTACGAGCAACTGAGCGCCGAAGGTAAAGCGGTTCGCGTCGTTTCTATGCCATCGAC
CGATGCGTTTGATAAGCAAGATGCGGCTTACCGTGAAGCCGTTCTGCCAGCCGCTGTGACTAAGCGTATCGCGATTGAAG
CGGGCATTGCCGACTTCTGGTACAAGTACGTTGGCTTTGGTGGTCGCATCATCGGTATGACTAGCTTCGGTGAATCAGCA
CCAGCGGGTGAGCTGTTCAAACTGTTTGGTTTCACGACTGAAAACGTAGTGAAGCAAGCTAAAGAACTGCTGGCGTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(355-525)

Transketolase, C-terminal domain (Transketolase_C)

(542-656)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KUP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.352

99.398

0.471