Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   J7445_RS07220 Genome accession   NZ_CP072524
Coordinates   1527743..1528978 (-) Length   411 a.a.
NCBI ID   WP_209282860.1    Uniprot ID   -
Organism   Neisseria sicca strain NS20201025     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1522743..1533978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7445_RS07195 (J7445_07195) rpsP 1525013..1525261 (+) 249 WP_003740833.1 30S ribosomal protein S16 -
  J7445_RS07200 (J7445_07200) rimM 1525280..1525789 (+) 510 WP_209282858.1 ribosome maturation factor RimM -
  J7445_RS07205 (J7445_07205) trmD 1525789..1526538 (+) 750 WP_003740829.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  J7445_RS07210 (J7445_07210) rplS 1526552..1526917 (+) 366 WP_003740828.1 50S ribosomal protein L19 -
  J7445_RS07215 (J7445_07215) - 1527244..1527750 (-) 507 WP_209282859.1 CvpA family protein -
  J7445_RS07220 (J7445_07220) tpc 1527743..1528978 (-) 1236 WP_209282860.1 SPOR domain-containing protein Machinery gene
  J7445_RS07225 (J7445_07225) folC 1528991..1530265 (-) 1275 WP_209282861.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  J7445_RS07230 (J7445_07230) - 1530398..1530832 (-) 435 WP_209282862.1 protein YgfX -
  J7445_RS07235 (J7445_07235) - 1530837..1531196 (-) 360 WP_003761526.1 hypothetical protein -
  J7445_RS07240 (J7445_07240) - 1531183..1531674 (-) 492 WP_003761530.1 MepB family protein -
  J7445_RS07245 (J7445_07245) - 1531770..1532498 (-) 729 WP_003740819.1 amino acid ABC transporter ATP-binding protein -
  J7445_RS07250 (J7445_07250) - 1532501..1533172 (-) 672 WP_070498712.1 sel1 repeat family protein -
  J7445_RS07255 (J7445_07255) rsmA 1533188..1533967 (-) 780 WP_209282863.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44325.74 Da        Isoelectric Point: 9.8454

>NTDB_id=553913 J7445_RS07220 WP_209282860.1 1527743..1528978(-) (tpc) [Neisseria sicca strain NS20201025]
MSDNKQNEVLTGYEQLKRRNRRRLVMASGLVAASTVLLGVALSTGPENKPEENAQTTTIQQNNANAEPANLADATVLEPS
TKEDLEAAAEAAKNADAEVAEAADKPQEIGTLERNAQAQPEPQPEVPPAAPEDLGPPLVLINDTLSDSDIKGLEESEKIH
KAEAAKREAAARRAEERRRNREEQRKAQQLQAQEAAEREANAAARKRALQAAKAEKAERAAAAERNKLAQLEKAEKAVAE
RKALKAKEEAAAKHKAAAEKAKETVTASASEPKERIRVDASKYEKIETANKKASAVREAEAKVAKAKAEPAAKAEKTAAA
ERLSEKAKTKTAEVKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEVMTDKGKVYRVKSGAYKNAYDAERDLNKLR
VHGIAGQVTNE

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=553913 J7445_RS07220 WP_209282860.1 1527743..1528978(-) (tpc) [Neisseria sicca strain NS20201025]
ATGTCTGACAATAAGCAAAATGAAGTTCTGACCGGTTACGAACAGCTCAAACGCCGCAACCGCCGCCGCTTGGTTATGGC
ATCGGGGTTGGTGGCGGCATCGACCGTTTTATTGGGCGTCGCCCTGTCAACCGGACCGGAAAACAAGCCAGAAGAAAACG
CCCAAACTACAACCATCCAACAGAATAATGCCAACGCAGAACCTGCCAACCTGGCGGATGCGACCGTGTTGGAACCCTCT
ACCAAAGAAGATTTGGAAGCAGCGGCAGAAGCGGCTAAAAATGCCGATGCCGAAGTAGCGGAAGCAGCGGACAAGCCTCA
GGAAATCGGCACGCTGGAGCGAAACGCCCAAGCGCAGCCCGAACCGCAACCTGAAGTACCACCTGCCGCACCTGAAGATT
TAGGTCCGCCTTTGGTGCTGATTAACGATACGCTGTCAGACAGCGACATCAAAGGTTTGGAAGAATCCGAGAAAATCCAC
AAGGCCGAAGCCGCCAAACGCGAAGCTGCCGCACGCCGCGCGGAAGAGCGTCGCCGCAATCGCGAAGAGCAGCGTAAAGC
GCAACAGCTCCAAGCACAAGAAGCAGCTGAACGCGAAGCCAATGCCGCCGCACGCAAACGCGCCCTTCAAGCCGCTAAAG
CCGAGAAGGCGGAACGCGCTGCCGCAGCCGAACGCAACAAACTGGCGCAATTGGAAAAAGCTGAAAAAGCCGTTGCCGAA
CGTAAGGCGTTAAAAGCCAAAGAAGAAGCGGCAGCGAAACACAAAGCGGCAGCGGAAAAAGCCAAAGAAACCGTTACGGC
ATCCGCGTCCGAACCTAAAGAAAGAATTCGGGTAGATGCTTCCAAATACGAAAAAATTGAAACAGCTAACAAAAAAGCTT
CTGCGGTAAGAGAAGCAGAAGCGAAAGTTGCCAAAGCCAAAGCCGAGCCGGCAGCCAAAGCAGAGAAAACCGCTGCTGCC
GAAAGGTTGTCTGAAAAGGCAAAAACCAAAACCGCCGAAGTCAAATCAGGTAAAAAAGCCGCCATTCAGGCTGGTTATGC
TGAAAAAGAACGCGCCTTGAGCCTGCAACGCAAAATGAAAGCGGCAGGTATCGACTCGACCATTACCGAAGTGATGACGG
ATAAAGGAAAGGTTTACCGCGTCAAATCAGGTGCATACAAAAACGCCTACGACGCCGAACGCGACTTGAACAAACTGCGC
GTACACGGCATTGCCGGACAGGTCACCAATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

47.942

100

0.482