Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   LZM82_RS10650 Genome accession   NZ_CP090399
Coordinates   2355356..2356039 (+) Length   227 a.a.
NCBI ID   WP_001082313.1    Uniprot ID   G9IDB0
Organism   Vibrio cholerae strain PanChol     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2350356..2361039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZM82_RS10620 (LZM82_10620) - 2351316..2352332 (-) 1017 WP_000862956.1 YqaJ viral recombinase family protein -
  LZM82_RS10625 (LZM82_10625) - 2352393..2352536 (-) 144 WP_000167277.1 hypothetical protein -
  LZM82_RS10630 (LZM82_10630) bet 2352618..2353436 (-) 819 WP_000414662.1 phage recombination protein Bet -
  LZM82_RS10635 (LZM82_10635) - 2353516..2353935 (-) 420 WP_000795985.1 single-stranded DNA-binding protein -
  LZM82_RS10640 (LZM82_10640) - 2353951..2354277 (-) 327 WP_000455723.1 hypothetical protein -
  LZM82_RS10645 (LZM82_10645) - 2354645..2355247 (+) 603 WP_000035785.1 hypothetical protein -
  LZM82_RS10650 (LZM82_10650) ideA 2355356..2356039 (+) 684 WP_001082313.1 endonuclease Regulator
  LZM82_RS10655 (LZM82_10655) - 2356270..2357286 (+) 1017 WP_001918293.1 AAA family ATPase -
  LZM82_RS10660 (LZM82_10660) istA 2357394..2358893 (+) 1500 WP_001920874.1 IS21 family transposase -
  LZM82_RS10665 (LZM82_10665) istB 2358883..2359638 (+) 756 WP_000546748.1 IS21-like element helper ATPase IstB -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26424.51 Da        Isoelectric Point: 7.5402

>NTDB_id=553913 LZM82_RS10650 WP_001082313.1 2355356..2356039(+) (ideA) [Vibrio cholerae strain PanChol]
MNRTNFLVTFLIALFAIPAFAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNESRAYGQCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKLRDLRIRGIQGKSNCYVSGSC

Nucleotide


Download         Length: 684 bp        

>NTDB_id=553913 LZM82_RS10650 WP_001082313.1 2355356..2356039(+) (ideA) [Vibrio cholerae strain PanChol]
ATGAATAGAACTAATTTTCTCGTTACCTTCTTAATAGCGTTGTTCGCTATCCCTGCATTTGCAGAACACCCAACATCGTT
CAGCCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCTTGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCAGTAGGTGAGCTCAACGGGGATAGATCAAATTTTC
GATTTGGAATGATTCCGAACGAATCAAGGGCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGCCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGACA
ACAAACTCAGCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGATGAGTGGGAAAAATTACGTGATTTGAGGATTAGAG
GCATTCAAGGTAAGTCTAATTGCTATGTATCAGGCAGCTGCTAG

Domains

Predicted by InterProScan.

Endonuclease I (Endonuclease_1)

(41-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G9IDB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

100

100

1
  dns Aliivibrio fischeri ES114

52.609

100

0.533
  dns Vibrio parahaemolyticus RIMD 2210633

52.402

100

0.529
  dns Vibrio cholerae strain A1552

51.556

99.119

0.511
  dns Campylobacter jejuni RM1221

38.393

98.678

0.379