Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   J7445_RS05100 Genome accession   NZ_CP072524
Coordinates   1083113..1084870 (-) Length   585 a.a.
NCBI ID   WP_209283243.1    Uniprot ID   -
Organism   Neisseria sicca strain NS20201025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1078113..1089870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7445_RS05080 (J7445_05080) tilS 1078585..1079928 (-) 1344 WP_209283241.1 tRNA lysidine(34) synthetase TilS -
  J7445_RS05085 (J7445_05085) - 1080022..1080981 (-) 960 WP_039410222.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  J7445_RS05090 (J7445_05090) - 1081200..1081601 (+) 402 WP_019271250.1 RNA-binding S4 domain-containing protein -
  J7445_RS05095 (J7445_05095) - 1081750..1082868 (-) 1119 WP_209283242.1 hypothetical protein -
  J7445_RS05100 (J7445_05100) recD 1083113..1084870 (-) 1758 WP_209283243.1 exodeoxyribonuclease V subunit alpha Machinery gene
  J7445_RS05105 (J7445_05105) - 1084935..1085141 (-) 207 WP_141743156.1 hypothetical protein -
  J7445_RS05110 (J7445_05110) rlmJ 1085085..1085930 (+) 846 WP_209283244.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  J7445_RS05115 (J7445_05115) dinB 1086034..1087092 (+) 1059 WP_209283245.1 DNA polymerase IV -
  J7445_RS05120 (J7445_05120) - 1087223..1087954 (+) 732 WP_209283246.1 phosphoadenylyl-sulfate reductase -
  J7445_RS05125 (J7445_05125) cah 1088275..1089033 (+) 759 WP_209283247.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64037.25 Da        Isoelectric Point: 6.1284

>NTDB_id=553908 J7445_RS05100 WP_209283243.1 1083113..1084870(-) (recD) [Neisseria sicca strain NS20201025]
MAENTADDLNLAAAQAAGHLLERCVPEHAAVLTPYVLRLFAALQNGHSFVWLDEGEADELAGLAPTVGQGTSPLVLQGRK
LFLGRMWQLEHDLVAEIKRLAEAEVEPVDWMSASQNLSGWFADKGSAGQRDAAGLALLQAFMLITGGPGTGKTTTVAKLL
GLICTNSATRLPRIALAAPTGKAAAHMARALHRAVDGFEMPDVVRNHLSALEGQTVHRLLKLRPPQMLPAFDGNRPLPLD
VLVVDEASMLDVSLLLHLLRAIPSGCRVIFLGDEFQLPSVGVGAVLAALSRRTVLDKETADQLSIYLPEHGFPVEENPPV
LSQNVAQLTVSHRFGANSGIGCLARSVVSGKSGEGWAQFALFPDELEIREGRLKQQAELLYRKHEKYWQAVDKNDVALAF
GHAADVVVLAAWRQDAEAFNEEYCRYLQRKHRAGADTPWFAGQIIMIARNDYTLEVFNGDIGLIMPDAESANGLAAYFPN
ADGFKKIAISRLPQFESAFAMTVHKSQGSEYREVWLLPPSRKIEQGGDDTLSGLNNALLYTAITRARERFVFWGNEEQWR
MAVETRKTRRTALGDILDAMFVPKA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=553908 J7445_RS05100 WP_209283243.1 1083113..1084870(-) (recD) [Neisseria sicca strain NS20201025]
ATGGCTGAGAATACCGCCGATGATTTGAACCTTGCCGCCGCTCAAGCGGCCGGGCATTTGCTGGAGCGTTGCGTACCGGA
GCATGCTGCGGTGCTGACGCCTTATGTGTTGCGGCTGTTTGCGGCTTTGCAGAACGGGCACTCGTTTGTGTGGCTGGATG
AGGGCGAGGCGGACGAATTGGCGGGATTGGCGCCGACGGTCGGGCAGGGCACGTCGCCGTTGGTGTTGCAGGGCAGAAAG
TTGTTTTTGGGGCGGATGTGGCAGCTCGAGCATGATTTGGTGGCTGAAATCAAGCGTTTGGCAGAAGCGGAAGTCGAGCC
TGTGGATTGGATGAGCGCGTCGCAAAACTTGTCCGGCTGGTTTGCCGACAAAGGCAGCGCAGGGCAGCGGGATGCGGCGG
GGCTTGCCCTGCTTCAGGCGTTTATGCTGATTACGGGCGGGCCGGGTACGGGAAAGACGACGACGGTGGCGAAACTTTTG
GGGCTGATTTGTACCAACTCTGCCACGCGCCTGCCGCGTATCGCTCTGGCCGCGCCGACGGGCAAGGCTGCGGCGCATAT
GGCGCGCGCGCTGCATCGGGCGGTGGACGGTTTCGAGATGCCGGATGTGGTGCGCAATCATTTGTCCGCTCTGGAAGGGC
AGACGGTCCACCGCCTTTTGAAGCTGCGCCCGCCGCAAATGCTGCCTGCGTTTGACGGCAACCGCCCGCTGCCTTTGGAT
GTGTTGGTGGTGGATGAGGCTTCGATGTTGGATGTTTCCCTGCTGCTTCACTTGCTGCGTGCGATTCCGTCGGGCTGCCG
CGTGATTTTTTTGGGCGACGAGTTCCAACTGCCTTCGGTCGGTGTCGGCGCGGTATTGGCGGCGTTGTCGAGACGGACGG
TTTTGGATAAGGAGACGGCGGATCAGCTGAGCATTTATCTGCCTGAACACGGTTTCCCCGTGGAGGAAAATCCGCCGGTT
TTGTCGCAAAACGTCGCGCAACTGACGGTCAGCCACCGTTTCGGCGCAAATAGCGGCATCGGTTGCTTGGCGAGGTCGGT
TGTGTCGGGTAAGAGCGGGGAAGGTTGGGCGCAGTTTGCCTTGTTCCCCGATGAGTTGGAAATCCGCGAAGGTCGTCTGA
AACAGCAGGCGGAGCTGCTTTACCGTAAACACGAAAAATACTGGCAGGCAGTCGATAAAAACGATGTGGCGCTGGCGTTC
GGACACGCGGCGGATGTGGTCGTTTTGGCGGCATGGCGGCAGGACGCGGAGGCGTTCAACGAAGAGTATTGCCGTTATCT
GCAACGCAAACATCGGGCGGGCGCGGATACGCCGTGGTTCGCGGGACAAATCATCATGATTGCGCGCAACGACTATACGC
TGGAAGTGTTCAACGGCGACATCGGGCTGATTATGCCCGACGCGGAATCGGCAAATGGTTTGGCGGCGTATTTCCCGAAT
GCGGACGGCTTCAAAAAAATTGCCATCAGCCGCCTGCCACAGTTTGAGTCCGCGTTCGCCATGACCGTGCATAAAAGCCA
AGGTTCGGAATACCGGGAAGTGTGGCTGCTACCGCCATCAAGAAAAATAGAGCAGGGCGGGGATGACACGCTGTCAGGCT
TGAACAACGCGCTGCTCTACACCGCCATCACCCGCGCGCGGGAACGCTTCGTTTTTTGGGGAAATGAAGAACAATGGCGG
ATGGCGGTGGAGACCCGCAAAACCCGCCGCACGGCATTGGGCGACATCTTGGACGCGATGTTCGTGCCGAAAGCTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(498-549)

AAA domain (AAA_30)

(126-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

63.345

96.068

0.609