Detailed information NTG0553906

Bioinformatically predicted

Overview

• Name: recB
• Type: Machinery gene
• Locus tag: J7445_RS03455
• Genome accession: NZ_CP072524
• Coordinates: 734297..737938 (-)
• Length: 1213 a.a.
• NCBI ID: WP_070655734.1
• Uniprot ID: -
• Organism: Neisseria sicca strain NS20201025
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	732924..733931	734297..737938	flank	366

Gene organization within MGE regions

Location: 732924..737938

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7445_RS03450 (J7445_03450)	-	732924..733931 (-)	1008	WP_209283140.1	IS5 family transposase	-
J7445_RS03455 (J7445_03455)	recB	734297..737938 (-)	3642	WP_070655734.1	exodeoxyribonuclease V subunit beta	Machinery gene

Sequence

Protein

• Length: 1213 a.a.
• Molecular weight: 136603.41 Da
• Isoelectric Point: 4.8581

>NTDB_id=553906 J7445_RS03455 WP_070655734.1 734297..737938(-) (recB) [Neisseria sicca strain NS20201025]
MPANAPIPAFDPLSIAISGTNLIEASAGTGKTYGIAALFTRLVVLEQMPVESILTVTFTKAATAELKTRLRARLDEVLQA
LESVEDTDNLSDDLETYCRDNHLGDVFLTGLLKQALAQESRARLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCRA
PMDVELTEDNRDRLLIPAQDFWRDRIVNDPILAKLVFEHRQTPQTMLAAIQKFVSRPYLVFRRPETDLVAAQENFRKTWE
KVRSKLDALEETFWRIRPILDSNSYREKTFKTVFLELQSAAQSDALPSFGKTTSEKLPMFAVEALASKVKKGNTPDAAAF
ADLQILANLGADSAAIAQAEEETLTLLHLDLLDHLNASLSEQKKSKRERGFDDLLLDVYDALTDNPQADSLAQAVAQNWR
IALIDEFQDTDPLQYEIFRKIFISQNKPLFLVGDPKQAIYSFRGADIYAYLQAAADAQHSYTLATNYRSHAKLINGIGAL
FRCKNRPFVLDGIDYTEVGAARSESRLSPPRTAIQIRWLNGKDDEVLNKDILRRRASEYCADEIAHTLNEAAEGRLKFKD
RPVVSGDIAVLVRTFNEGVMVAKSLKTRGIQSVLLSRESVFTTPEALALAALLDYWLNPGQIGSLRFVLSGTLFGYDAQA
LYQLNRNEAELLNWINTAAESVAIWRKSGIYAALQYFSSLHGIETGLLARGDERGLTNFHQLLECLSEEEGQSLSPAALH
QWLNDQISLAQDRSVGESGLLRLESDEALVKIVTMHASKGLQYPLVYCPFVWDAKDMKPADWQILHSAAHTTELLAKTQL
NDEDRIHLADEEMAERLRLLYVALTRAEEQLVLYAAHCGDTADSPFAYLLEGSADSNRADTRQAYDQERKANKALGELQM
LKNNWLRFLNNPPEHTDFSFSEDAPQPAAAQNRQLSDDLYQAAVIPARGFQFIRHTSFTGLSRQVKTRDDEREELQPALD
PAETAAETERSSENTLPVSDDLPNADIHHFPRGANAGVCLHEMLEKFDFAQSAENQSNLIAETLTRYGFDLLWTDAVKQM
LDTCRKTRLSAQSLSEIPPERRLPEMGFTLYTEDFKLHDLRRWFARENSSLPPECIEAAERLDFQDVQGFLNGFIDMVCQ
DSDDLVCIIDYKSNHLGDNAEAYTQQAMNEAVADHHYYLQALIYAIAVARYFKLRGKPLPKIAIRYLFLRGLDGTDNGIW
QWDLDTESLAQWL

Nucleotide

• Length: 3642 bp

>NTDB_id=553906 J7445_RS03455 WP_070655734.1 734297..737938(-) (recB) [Neisseria sicca strain NS20201025]
ATGCCTGCCAACGCCCCCATTCCAGCCTTCGATCCTTTAAGCATCGCCATATCAGGCACCAATCTGATTGAAGCCTCTGC
CGGTACGGGCAAAACCTACGGCATTGCAGCGTTGTTCACGCGCTTGGTCGTGCTTGAGCAGATGCCGGTCGAAAGCATTT
TGACCGTTACTTTTACCAAAGCGGCGACGGCGGAATTGAAAACCCGTTTGCGCGCGCGTTTGGACGAAGTATTGCAGGCT
TTGGAAAGCGTGGAAGATACAGACAATCTTTCAGACGACCTCGAAACATACTGCCGAGATAATCATCTGGGTGATGTGTT
TTTGACCGGCTTGCTCAAACAGGCATTGGCTCAAGAAAGTCGGGCGCGACTGATTGTCCGCCTCAAAGCCGCCATCGGAC
AATTTGACAACGCCGCGATTTATACCATTCACGGTTTCTGTCAACGCATTTTGCGCGATTATGCGTTTTTGTGCCGCGCG
CCTATGGATGTCGAGTTGACCGAAGACAACCGTGACCGCCTGCTGATTCCTGCCCAAGATTTTTGGCGCGACCGCATCGT
CAATGATCCCATTCTAGCGAAGCTGGTATTTGAACACCGCCAAACGCCGCAAACCATGCTGGCGGCAATACAAAAGTTCG
TCAGCCGTCCGTATTTGGTTTTCAGACGACCTGAAACAGACTTAGTCGCCGCGCAGGAAAACTTTCGGAAAACATGGGAA
AAAGTACGTTCCAAACTGGATGCTTTGGAAGAAACATTCTGGCGCATTCGTCCGATATTGGATAGCAACTCATATCGTGA
AAAAACATTCAAAACCGTCTTTCTCGAACTCCAATCCGCCGCCCAATCCGATGCCCTTCCTTCTTTTGGCAAAACGACGT
CAGAAAAGCTGCCCATGTTTGCCGTAGAAGCTTTAGCGTCCAAAGTCAAAAAAGGCAATACGCCCGATGCTGCCGCCTTT
GCCGATTTGCAGATATTGGCGAATCTCGGCGCAGATTCGGCTGCCATTGCGCAAGCCGAAGAAGAGACGCTTACCCTGCT
CCACCTCGACCTGCTCGACCATCTTAATGCCAGCCTGAGCGAACAGAAAAAATCCAAGCGCGAACGTGGTTTCGACGATT
TGCTGCTGGATGTTTACGACGCATTGACCGACAACCCGCAGGCAGACTCGCTGGCTCAGGCGGTGGCGCAGAACTGGCGC
ATCGCCTTGATTGACGAATTTCAAGACACCGACCCGCTGCAATACGAGATTTTCCGAAAAATCTTCATCAGCCAAAACAA
GCCTTTATTCCTAGTCGGCGACCCCAAGCAAGCAATTTACAGCTTTCGCGGCGCCGACATTTACGCCTATCTGCAAGCCG
CAGCCGACGCACAACACAGCTACACACTGGCGACCAATTACCGCAGCCATGCCAAGCTGATTAACGGCATAGGCGCATTG
TTCCGCTGCAAAAACCGCCCTTTCGTCTTGGACGGCATCGACTATACCGAAGTCGGCGCCGCACGTTCCGAAAGTCGGCT
TTCGCCGCCCCGCACCGCCATACAGATACGCTGGCTAAACGGCAAAGACGACGAAGTGCTCAACAAAGACATCTTGCGCC
GCCGTGCATCCGAATATTGCGCCGACGAAATTGCCCACACGCTCAACGAAGCTGCCGAAGGTCGTCTGAAATTCAAAGAC
AGACCGGTCGTTTCGGGCGACATTGCCGTCTTGGTCAGGACGTTTAACGAAGGAGTGATGGTAGCAAAATCGTTGAAAAC
GCGCGGCATACAAAGCGTTTTGCTCTCAAGGGAATCGGTTTTCACCACGCCTGAAGCCCTCGCCCTTGCCGCGCTGTTGG
ATTACTGGCTAAATCCCGGACAAATCGGCTCGTTACGCTTCGTCTTATCCGGCACATTGTTCGGCTACGACGCGCAAGCC
CTGTATCAACTCAACCGCAACGAAGCCGAATTATTAAACTGGATAAACACCGCCGCCGAATCCGTCGCCATTTGGCGGAA
AAGCGGGATTTATGCCGCGTTGCAATACTTCTCCTCGTTGCACGGCATCGAAACCGGACTGCTTGCACGTGGCGACGAGC
GCGGCCTCACCAATTTCCATCAGCTTTTAGAATGCCTCTCCGAAGAAGAAGGACAAAGCCTCAGCCCCGCCGCCCTGCAC
CAATGGCTCAACGACCAAATCAGTCTGGCGCAAGACCGTTCCGTCGGCGAATCAGGGCTTTTACGGCTTGAAAGCGACGA
AGCACTGGTCAAAATCGTGACCATGCATGCCTCCAAAGGTTTGCAATATCCTTTGGTCTATTGCCCTTTCGTTTGGGACG
CGAAAGACATGAAGCCCGCCGATTGGCAAATCCTCCACTCCGCCGCCCACACCACGGAACTGCTTGCCAAAACGCAACTT
AACGATGAAGACCGCATCCACCTTGCCGACGAAGAAATGGCAGAACGCCTGCGCCTGCTTTACGTTGCGCTGACCCGCGC
CGAAGAGCAGCTCGTCCTCTATGCCGCCCATTGCGGCGATACCGCCGATTCCCCTTTCGCCTACCTGCTTGAAGGCAGCG
CCGACAGCAATCGGGCGGATACCCGCCAAGCCTATGACCAAGAGCGCAAAGCAAACAAAGCCCTAGGCGAGCTACAAATG
CTGAAAAACAACTGGCTGCGTTTCCTCAACAATCCCCCCGAACATACCGACTTCAGCTTTTCCGAAGACGCGCCGCAACC
CGCTGCCGCGCAAAACCGCCAACTTTCAGACGACCTCTATCAAGCCGCCGTTATCCCCGCCCGCGGATTTCAGTTTATCC
GACATACCAGCTTTACCGGCCTCAGCCGCCAAGTCAAAACCCGAGACGACGAGCGCGAAGAATTACAACCCGCCCTCGAC
CCCGCAGAAACCGCCGCCGAAACAGAAAGGTCGTCTGAAAACACCCTCCCCGTTTCAGACGACCTCCCAAATGCCGACAT
TCACCATTTCCCGCGCGGCGCCAACGCCGGCGTCTGTCTGCATGAAATGTTGGAAAAATTCGACTTTGCCCAAAGCGCCG
AAAACCAAAGCAACCTGATAGCCGAAACCTTGACCCGCTACGGCTTCGACCTACTCTGGACAGATGCCGTCAAACAAATG
CTCGACACCTGCCGTAAAACGCGCCTTTCTGCACAAAGCCTGTCTGAAATCCCACCCGAACGCCGCCTTCCTGAAATGGG
ATTCACCCTCTACACCGAAGACTTTAAACTCCATGACCTGCGCCGCTGGTTTGCCCGCGAAAACAGTTCACTGCCGCCGG
AATGTATCGAAGCCGCAGAAAGATTGGATTTCCAAGATGTACAAGGCTTTCTCAACGGCTTCATCGACATGGTCTGCCAA
GATTCAGACGACCTCGTGTGCATCATCGATTACAAATCCAACCATCTGGGCGACAACGCCGAAGCTTATACGCAACAAGC
CATGAACGAAGCCGTAGCAGACCACCACTACTACCTGCAAGCGCTCATCTACGCCATCGCCGTAGCCCGCTATTTCAAAC
TGCGCGGCAAACCGTTACCCAAAATCGCCATCCGATACCTCTTCCTGCGCGGATTGGACGGCACGGACAACGGCATCTGG
CAATGGGACTTGGATACCGAATCTTTGGCACAATGGCTGTAA

Domains

Predicted by InterproScan.

• PD-(D/E)XK nuclease superfamily (PDDEXK_1) (995-1191)

• UvrD-like helicase C-terminal domain (UvrD_C) (461-834)

• UvrD/REP helicase N-terminal domain (UvrD-helicase) (17-457)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recB	Neisseria gonorrhoeae strain FA1090	62.16	100	0.622