Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   J7445_RS02885 Genome accession   NZ_CP072524
Coordinates   602599..604824 (+) Length   741 a.a.
NCBI ID   WP_070656696.1    Uniprot ID   -
Organism   Neisseria sicca strain NS20201025     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 597599..609824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7445_RS02855 (J7445_02855) leuD 597858..598499 (-) 642 WP_070656695.1 3-isopropylmalate dehydratase small subunit -
  J7445_RS02860 (J7445_02860) - 598576..598713 (-) 138 WP_009311431.1 lipoprotein -
  J7445_RS02865 (J7445_02865) - 598746..598883 (-) 138 WP_003742168.1 entericidin A/B family lipoprotein -
  J7445_RS02870 (J7445_02870) - 599100..599321 (-) 222 WP_029609583.1 hypothetical protein -
  J7445_RS02875 (J7445_02875) leuC 599418..600827 (-) 1410 WP_009311426.1 3-isopropylmalate dehydratase large subunit -
  J7445_RS02880 (J7445_02880) gshA 601095..602447 (+) 1353 WP_049224332.1 glutamate--cysteine ligase -
  J7445_RS02885 (J7445_02885) comA 602599..604824 (+) 2226 WP_070656696.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J7445_RS02890 (J7445_02890) clpP 605334..605954 (-) 621 WP_019270082.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  J7445_RS02895 (J7445_02895) tig 606042..607352 (-) 1311 WP_045073012.1 trigger factor -
  J7445_RS02900 (J7445_02900) - 607682..608368 (-) 687 WP_141752068.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80345.17 Da        Isoelectric Point: 9.4331

>NTDB_id=553899 J7445_RS02885 WP_070656696.1 602599..604824(+) (comA) [Neisseria sicca strain NS20201025]
MLRYYGLPFWAVGVIASFALPSVPHWGVWLLAALVLLAASRRFAAAGMMLCVLLGAAYGVFRTEAALSVQWPLNGASESV
LTVEVADMPRGDGRRVQFAAKAWTEDRRQFDLLLSDYQKRDWAVGSRWKVSARLKPIIGEVNLRGLNREAWALANGLDGA
GTLGKGRSLVREGGGVGLAVWRDAVSRRWQAVGADSPDFSDGIGLMRALSIGEQSALRPELWQAFRPLGLTHLVSISGLH
VTMVAVLAGWLVKLIFRRLPWIPAKPRVWILAGGAAGALFYALLAGFSVPTQRSVLMLTAFAWAWWRGSLSSGWTAWWQA
LAVVLLLDPLAVLGVGTWLSFGLVAALIWVSAGRLKERGWRLAVRGQWAATILSVVLLGYIFASLPIISPLVNAAMIPWF
SWVLTPLALLGSVLPFAPLQWAAAGLAEYTLRGLVWLAEVSPEFAVAAAPVPLLVLAFAAALLWLLPRGLGLRPWACLVL
AGFVFYRPERLDDGLARITVMDAGQGLSVLVQTRDRNLLFDTGTAQAAQTGIVPSLNAMGVRRLDTLILSHHDSDHDGGL
DAVSDIEIGETLAGQPEFYPNAKLCTEAQWQWDGVDFELLRSSENPGSEDNDKSCVFRIVSDGQALLVTGDLGVKGEAEL
VERYGSSLYSQVLILGHHGSNTASSGGFLNTVAPKYAVASSGYANAYKHPTPAVQTRVRAHGATLLRTDLSGALVFELGG
DEIFKGRLKRDKFYWQKKPFE

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=553899 J7445_RS02885 WP_070656696.1 602599..604824(+) (comA) [Neisseria sicca strain NS20201025]
TTGCTGAGATATTATGGATTGCCGTTTTGGGCAGTCGGCGTCATCGCTTCGTTCGCTTTGCCGTCCGTACCGCATTGGGG
CGTGTGGTTGTTGGCGGCATTAGTTTTGCTGGCGGCTTCGCGGCGGTTTGCGGCGGCGGGAATGATGCTGTGTGTCCTGC
TTGGCGCGGCTTACGGCGTGTTTCGGACGGAAGCGGCTTTGTCGGTGCAATGGCCGCTGAACGGGGCTTCGGAGTCGGTG
TTGACGGTTGAAGTCGCGGATATGCCGCGCGGCGACGGGCGGCGGGTGCAGTTTGCGGCGAAGGCGTGGACAGAGGACAG
GCGGCAGTTTGATTTATTACTGTCGGATTATCAGAAACGCGATTGGGCGGTGGGCAGCCGCTGGAAAGTGTCGGCACGGC
TCAAGCCGATTATCGGCGAAGTGAACCTGCGCGGGCTGAACCGCGAGGCTTGGGCGTTGGCAAACGGTTTGGATGGCGCG
GGTACGCTGGGCAAGGGCAGGAGCTTGGTTCGCGAGGGCGGCGGTGTCGGCTTGGCGGTGTGGCGCGATGCAGTCAGCCG
CCGTTGGCAGGCTGTCGGGGCGGACAGTCCGGATTTTTCGGACGGTATCGGTCTGATGCGGGCTTTGAGCATAGGCGAAC
AATCGGCGTTGAGGCCCGAACTGTGGCAGGCGTTCCGACCTTTGGGCTTGACGCACTTGGTCAGTATTTCGGGGCTGCAC
GTTACGATGGTGGCGGTGTTGGCGGGTTGGCTGGTCAAACTGATTTTCAGACGACTGCCTTGGATACCGGCAAAACCACG
CGTGTGGATTTTGGCGGGCGGTGCAGCGGGGGCTTTGTTTTATGCGCTGCTGGCGGGCTTTTCCGTGCCGACGCAGCGCA
GCGTTTTGATGTTGACGGCGTTTGCCTGGGCGTGGTGGCGCGGCAGTCTGTCTTCGGGCTGGACGGCGTGGTGGCAGGCT
TTGGCAGTGGTGTTGCTGCTTGATCCTCTGGCGGTTTTGGGCGTCGGCACTTGGCTGTCGTTCGGCTTGGTTGCAGCCTT
GATTTGGGTTTCGGCAGGTCGTCTGAAAGAACGCGGCTGGCGTTTGGCTGTACGCGGACAATGGGCGGCGACGATATTGT
CGGTGGTATTACTGGGCTATATTTTTGCGTCCTTGCCCATCATCAGTCCTTTGGTCAATGCGGCGATGATTCCTTGGTTT
TCTTGGGTTTTGACACCTTTGGCGTTGCTGGGGTCGGTGTTGCCGTTCGCGCCTTTGCAATGGGCGGCGGCAGGTTTGGC
GGAATACACTTTGCGCGGCTTGGTTTGGCTGGCGGAGGTATCGCCTGAATTTGCCGTAGCCGCCGCGCCTGTGCCGCTGT
TGGTTTTGGCTTTTGCGGCGGCTTTGCTGTGGCTGTTGCCGCGCGGACTGGGGCTGCGGCCTTGGGCGTGTTTGGTGTTG
GCTGGATTTGTGTTTTACCGCCCGGAACGACTGGACGACGGGTTGGCGCGGATTACCGTAATGGATGCGGGACAGGGTTT
ATCGGTATTGGTACAGACGCGTGACCGCAACCTGCTGTTTGACACAGGGACGGCGCAGGCGGCACAAACGGGTATCGTGC
CGAGCCTGAACGCCATGGGTGTGCGCCGTTTGGACACGCTGATTTTGTCGCATCACGACAGCGACCACGACGGCGGTTTG
GATGCCGTTTCCGATATTGAAATCGGCGAAACGCTGGCGGGGCAGCCTGAGTTTTATCCGAACGCAAAACTTTGCACCGA
AGCGCAATGGCAATGGGACGGCGTGGATTTCGAGTTATTGAGGTCGTCTGAAAACCCAGGTAGCGAAGACAATGACAAAA
GCTGCGTCTTCCGCATCGTTTCCGACGGACAGGCTTTGCTGGTTACGGGTGATTTGGGCGTGAAGGGCGAAGCGGAACTG
GTAGAACGCTACGGCAGCTCGCTGTACAGCCAAGTTTTGATATTGGGACACCACGGCAGCAATACGGCTTCATCCGGCGG
CTTCCTAAACACCGTCGCGCCCAAATATGCCGTCGCTTCCAGTGGCTACGCCAACGCCTACAAACACCCCACCCCCGCCG
TCCAAACCCGCGTCCGCGCACACGGCGCGACTTTGTTGCGGACGGATTTGTCGGGCGCGCTGGTGTTTGAATTGGGCGGC
GATGAAATCTTTAAAGGTCGTCTGAAAAGAGATAAGTTTTATTGGCAGAAAAAGCCGTTTGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(209-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

71.795

100

0.718