Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   J7445_RS01610 Genome accession   NZ_CP072524
Coordinates   348716..351934 (-) Length   1072 a.a.
NCBI ID   WP_070655738.1    Uniprot ID   -
Organism   Neisseria sicca strain NS20201025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 343716..356934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7445_RS01600 (J7445_01600) - 344572..344811 (+) 240 WP_070655742.1 DUF333 domain-containing protein -
  J7445_RS01605 (J7445_01605) - 345247..348009 (-) 2763 WP_070655740.1 TonB-dependent receptor -
  J7445_RS01610 (J7445_01610) recC 348716..351934 (-) 3219 WP_070655738.1 exodeoxyribonuclease V subunit gamma Machinery gene
  J7445_RS01615 (J7445_01615) - 352274..354115 (-) 1842 WP_083310420.1 PglL family O-oligosaccharyltransferase -
  J7445_RS01620 (J7445_01620) - 354115..354474 (-) 360 WP_070655751.1 DUF2069 domain-containing protein -
  J7445_RS12110 - 354650..354793 (-) 144 WP_244969496.1 hypothetical protein -
  J7445_RS12115 - 354740..354985 (+) 246 WP_244969536.1 hypothetical protein -
  J7445_RS01630 (J7445_01630) - 354889..355785 (+) 897 WP_209283107.1 IS3 family transposase -
  J7445_RS01635 (J7445_01635) nfsB 355862..356512 (-) 651 WP_070655135.1 oxygen-insensitive NAD(P)H nitroreductase -

Sequence

Protein


Download         Length: 1072 a.a.        Molecular weight: 121737.78 Da        Isoelectric Point: 4.7258

>NTDB_id=553898 J7445_RS01610 WP_070655738.1 348716..351934(-) (recC) [Neisseria sicca strain NS20201025]
MFYLYQSNRLESLAALFAGIQRVRPLESALAAEQIVVQSQGMRRYLSVYLARELGVAANLQFSLPAGLTWQLMQKLIPDI
PALSPFSPEVMRWRLLDLFRSERFQTTSEFENVRAVLQSYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQEGKLLG
LGDDEVWQAQLWRYLDDGNQSAPHRVALWEKLLSSLDKAHLPERFFVFGISTMAPMYLQLLQKISEHCDVFVFALNPSGQ
YWGNVIEAAQLLKGGDEADLSQTGHPLLASLGKQGRDFFDFLTEIGLEEQPVFEEVSDDTLLHCLQNDIQNLRMPSEHSR
ADLLDDGSVRIVSAHSPLRELQILKDKLLRILHEHPDWQPHDIAVLTPNIEPYSPFIEAVFGQAQGGAQALPYSVSDVKL
SRRQPLLYALEQTLDLLESRFEVDKVLPLLESGLVLRRFGLTADDLPLLHDTIAELNVHWGLDGTMRGAADNLFTWQQAL
ERIVLGWMLPDDGSPLWQNVSAWHGDVNRLDVFGRLAAFIRTLSRLAAEWRKPAAAEEWTECCRDLVQSLFLPDADDQYA
LQQFEQALAKWQEETALAGFCGTLPQHTVIHHIRRFLGSESQAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT
KAAVFDLIAKHPQKGDRARRDDDRYLFLEAIISARDILYLSYVGRSIRNDDELAPSALVSELIDTVAAMTGRRSKELAEH
WVEQHPLQPFSHRYFIADNISDDLFSTRQDYAEALNRPREQARPFFSEALEENSPAPTVWQDDFIRFWKNPVKAWLQQTL
GWREPYRDEAWESAEPFEPQRADKIAAAYLDARRHNQDFQETAVRLDAESLLPAGELGKLWQQNFQAAAKRIDGELLQSP
KLPPFAYEIQFDGQTLQGSLGNLYQCGQVFYLDRKPNAPQRIALLLEHLIFCSVESAVGSSETETRQTHIVQPEETMIYP
EISSSHAQQMLQKWLTFFNLGQTRPLPFFAKTSLATAEAYGKKQSWEDALNKAKESYHGNKVSKGQKDYTEVALVFGNED
TEPVEGALFQRLVEELLIPLLDAVKEESSDAA

Nucleotide


Download         Length: 3219 bp        

>NTDB_id=553898 J7445_RS01610 WP_070655738.1 348716..351934(-) (recC) [Neisseria sicca strain NS20201025]
ATGTTCTACCTCTACCAATCCAACCGCCTTGAATCGCTAGCCGCCCTGTTTGCCGGAATCCAAAGGGTCAGGCCGCTTGA
GTCTGCTTTGGCGGCGGAACAGATTGTGGTGCAGAGTCAGGGGATGCGGCGTTATTTGAGTGTTTATCTGGCGCGCGAAC
TGGGGGTGGCGGCGAATTTGCAATTCAGTCTGCCGGCGGGTTTGACGTGGCAGTTGATGCAGAAACTGATCCCCGATATT
CCTGCGCTCAGTCCGTTTTCGCCGGAGGTAATGCGCTGGCGGCTTTTGGATTTGTTCCGTAGCGAGCGTTTTCAGACGAC
CTCTGAGTTTGAAAACGTACGCGCCGTTTTGCAAAGTTATTTGGGCAGCGGCGAGTCGGCGGATTATCAGTTGGCGGGGC
AGTTGGCGGATATTTTCGACCAGTATCTGGTGTACCGACCGCAGTGGATTGATGCCTGGCAGGAAGGCAAACTTCTGGGG
CTGGGCGACGACGAGGTCTGGCAGGCGCAGCTTTGGCGCTATTTGGACGACGGCAACCAATCCGCGCCGCACCGTGTGGC
GTTGTGGGAAAAGCTGCTGTCGTCTTTGGATAAGGCGCACCTGCCCGAGCGGTTTTTCGTGTTCGGCATTTCGACGATGG
CGCCGATGTATTTGCAGCTTTTGCAGAAAATTTCGGAACATTGCGATGTGTTTGTGTTCGCGCTCAATCCGAGCGGCCAG
TATTGGGGCAATGTGATTGAGGCGGCGCAGCTTTTGAAGGGCGGCGACGAGGCGGATTTGTCGCAGACGGGGCATCCGCT
GTTGGCGTCGTTGGGCAAGCAGGGGCGTGATTTTTTTGATTTTCTGACGGAAATCGGCTTGGAGGAACAGCCCGTGTTTG
AAGAGGTTTCAGACGACACGCTGCTGCACTGCCTGCAAAACGACATTCAAAACCTGCGGATGCCGTCTGAACACAGCCGC
GCGGATTTGCTGGACGACGGCTCCGTCCGTATCGTGTCGGCACACAGCCCTCTGCGCGAATTGCAGATTTTGAAAGACAA
GCTGTTGCGGATTCTGCACGAACATCCCGACTGGCAGCCGCACGATATTGCCGTTTTGACGCCGAACATCGAACCATACA
GCCCGTTTATCGAAGCGGTGTTCGGGCAGGCGCAGGGCGGGGCGCAGGCTTTGCCGTATTCGGTGTCGGACGTGAAACTC
AGCCGCCGCCAGCCGCTGCTTTACGCGCTGGAGCAGACGCTGGATTTGCTGGAAAGCCGGTTTGAAGTCGATAAAGTGCT
GCCGCTGTTGGAAAGCGGTTTGGTGCTGCGCCGTTTCGGGCTGACGGCGGACGATTTGCCGCTGCTGCACGACACCATTG
CCGAATTGAACGTGCATTGGGGGTTGGACGGAACGATGCGCGGCGCGGCGGACAATCTGTTCACCTGGCAGCAGGCGTTG
GAACGCATCGTGTTGGGCTGGATGCTGCCTGACGACGGCAGCCCGCTCTGGCAAAACGTCAGCGCGTGGCACGGTGATGT
CAACCGCCTCGATGTGTTCGGCCGCCTTGCCGCCTTCATCCGCACACTGTCACGCCTCGCCGCCGAGTGGCGCAAACCCG
CAGCGGCGGAGGAATGGACGGAATGCTGCCGCGATTTGGTGCAGTCATTGTTTCTGCCCGACGCCGACGACCAATACGCC
TTGCAGCAGTTTGAGCAGGCGTTGGCAAAATGGCAGGAAGAAACCGCGTTGGCAGGCTTTTGCGGTACTTTGCCGCAACA
CACGGTCATCCACCACATCCGCCGCTTTTTAGGCAGCGAAAGCCAAGCGGGCTTCCTGCGCGGCGGCATCACCTTTTGCA
GCATGGTGCCGATGAGGAGCCTGCCGTTTAAAGTCATCTGCCTGTTGGGGCTGAACGACGGCGATTTCCCGCGCAATACC
AAAGCCGCAGTATTCGACCTGATTGCCAAACACCCGCAAAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCTCTT
CCTCGAAGCCATCATCAGCGCGCGCGACATCCTTTATCTCTCCTACGTCGGCCGCAGCATCCGCAACGACGACGAACTCG
CCCCGTCCGCCCTCGTCAGCGAACTCATCGACACCGTCGCCGCCATGACCGGACGGCGCAGCAAAGAGCTGGCGGAACAC
TGGGTCGAGCAACATCCCCTGCAACCGTTCTCCCACCGCTATTTCATCGCAGACAACATTTCAGACGACCTCTTCAGCAC
GCGGCAAGACTACGCCGAAGCCCTCAACCGCCCGCGCGAACAGGCGCGTCCGTTTTTCAGCGAAGCCCTCGAAGAAAACA
GCCCCGCACCGACCGTCTGGCAGGACGACTTTATCCGCTTCTGGAAAAATCCCGTCAAAGCATGGCTGCAACAAACCCTA
GGCTGGCGCGAACCCTACCGCGACGAAGCATGGGAATCCGCCGAACCCTTTGAGCCGCAACGCGCCGACAAAATTGCCGC
CGCCTATCTCGACGCCCGCCGCCACAACCAAGACTTTCAAGAAACCGCCGTCCGCCTCGACGCCGAAAGCCTGTTGCCCG
CCGGCGAATTGGGTAAATTGTGGCAGCAGAATTTCCAAGCCGCCGCCAAACGCATAGACGGCGAATTGCTGCAAAGCCCC
AAACTGCCGCCCTTCGCCTACGAAATCCAGTTCGACGGGCAAACCCTGCAAGGCAGCCTCGGCAACCTGTACCAATGCGG
CCAAGTGTTCTACCTCGACCGCAAACCCAACGCCCCGCAGCGCATCGCCCTCTTGCTCGAACATTTAATCTTTTGCTCGG
TAGAGTCGGCAGTAGGGTCGTCTGAAACCGAAACCCGCCAAACCCATATCGTTCAGCCCGAAGAAACAATGATTTATCCC
GAAATATCCAGCAGCCACGCGCAACAAATGCTGCAAAAATGGCTGACGTTCTTCAACCTCGGACAAACGCGCCCGCTGCC
TTTCTTCGCCAAAACCAGCCTCGCCACCGCCGAAGCCTACGGCAAAAAACAGAGCTGGGAAGATGCCCTGAACAAAGCCA
AGGAAAGCTATCACGGCAACAAAGTCAGCAAAGGGCAAAAAGACTATACCGAAGTCGCCCTAGTGTTCGGCAACGAAGAC
ACCGAGCCGGTGGAAGGGGCGTTGTTCCAAAGATTGGTGGAAGAGCTGTTGATACCGCTGCTGGACGCGGTCAAGGAAGA
ATCGTCCGATGCGGCATAG

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(779-999)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

72.321

100

0.724