Detailed information NTG0553891

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J7445_RS00210
• Genome accession: NZ_CP072524
• Coordinates: 45651..46514 (+)
• Length: 287 a.a.
• NCBI ID: WP_070654844.1
• Uniprot ID: -
• Organism: Neisseria sicca strain NS20201025
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 40651..51514

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7445_RS00190 (J7445_00190)	-	40737..41834 (+)	1098	WP_070654842.1	YadA-like family protein	-
J7445_RS00195 (J7445_00195)	bamE	41902..42369 (+)	468	WP_049228456.1	outer membrane protein assembly factor BamE	-
J7445_RS00200 (J7445_00200)	pilF	42657..44336 (+)	1680	WP_049228453.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J7445_RS00205 (J7445_00205)	pilG	44408..45649 (+)	1242	WP_060974403.1	type II secretion system F family protein	Machinery gene
J7445_RS00210 (J7445_00210)	pilD	45651..46514 (+)	864	WP_070654844.1	A24 family peptidase	Machinery gene
J7445_RS00215 (J7445_00215)	coaE	46516..47145 (+)	630	WP_019270097.1	dephospho-CoA kinase	-
J7445_RS00220 (J7445_00220)	-	47302..47583 (+)	282	Protein_43	hypothetical protein	-
J7445_RS00225 (J7445_00225)	yacG	47622..47816 (+)	195	WP_049228449.1	DNA gyrase inhibitor YacG	-
J7445_RS00230 (J7445_00230)	ribF	47919..48848 (-)	930	WP_070654846.1	bifunctional riboflavin kinase/FAD synthetase	-
J7445_RS00235 (J7445_00235)	-	48953..49345 (-)	393	WP_070654848.1	hypothetical protein	-
J7445_RS00240 (J7445_00240)	ispH	49501..50469 (-)	969	WP_003756592.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
J7445_RS00245 (J7445_00245)	lspA	50496..51014 (-)	519	WP_070654850.1	signal peptidase II	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31448.72 Da
• Isoelectric Point: 8.3248

>NTDB_id=553891 J7445_RS00210 WP_070654844.1 45651..46514(+) (pilD) [Neisseria sicca strain NS20201025]
MLESLDTLAPFAIPLSIVVGLLIGSFLNVVIYRVPVMMERGWTQFAKEHLQLELTEEEQQPFNLMKPDSRCPKCHAPVKA
WQNIPIVSYLMLGGKCGSCKTPISIRYPLIELLTGILFGVVAWQYGWTMVTFGGLILTAILIALTFIDADTQYLPDSLTL
PLIWLGLLFNLNGTFVPLKSAVLGAVFGYMSLWLLCFIYKLLTGKIGMGNGDFKLLAAQGAWLGVGILPVLVFMAALIGL
IGAIIGRVAKGQYFAFGPSLAIAGWIILVANEPVHRAVTWWLTKSGF

Nucleotide

• Length: 864 bp

>NTDB_id=553891 J7445_RS00210 WP_070654844.1 45651..46514(+) (pilD) [Neisseria sicca strain NS20201025]
ATGTTGGAATCTTTGGATACATTAGCGCCATTCGCTATTCCGCTATCTATTGTCGTTGGTTTGTTAATCGGAAGTTTTCT
TAATGTTGTCATTTACCGCGTTCCTGTCATGATGGAACGCGGTTGGACTCAGTTTGCGAAAGAGCATTTGCAACTTGAAT
TAACGGAAGAAGAGCAGCAACCATTCAATTTGATGAAACCGGATTCACGCTGCCCCAAGTGTCATGCTCCGGTAAAGGCT
TGGCAAAATATTCCGATTGTCAGTTATCTGATGCTTGGCGGTAAATGCGGTTCGTGTAAAACGCCCATCAGCATCCGTTA
TCCCTTAATCGAATTATTGACCGGTATATTGTTTGGCGTAGTGGCGTGGCAATATGGCTGGACGATGGTTACATTTGGTG
GGTTAATATTGACTGCAATATTGATTGCATTGACCTTTATCGATGCGGATACTCAATATTTACCTGACAGCCTGACCCTG
CCGTTGATATGGTTAGGCTTGCTGTTTAATTTGAACGGCACATTCGTACCATTGAAATCCGCCGTCTTAGGTGCAGTTTT
CGGTTACATGAGCTTATGGTTGTTATGTTTCATCTATAAGCTTTTGACTGGAAAAATCGGTATGGGTAACGGCGATTTTA
AATTGCTGGCTGCTCAAGGTGCATGGCTTGGGGTCGGCATTTTACCTGTATTGGTTTTTATGGCAGCATTAATCGGTCTG
ATTGGAGCGATTATCGGGCGGGTTGCCAAAGGACAATATTTTGCTTTCGGTCCGAGTTTGGCCATTGCTGGCTGGATTAT
TTTGGTAGCCAACGAGCCGGTACATCGTGCCGTCACTTGGTGGCTGACAAAATCAGGATTTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-241)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	74.205	98.606	0.732
pilD	Vibrio cholerae strain A1552	46.909	95.819	0.449
pilD	Acinetobacter nosocomialis M2	49.042	90.941	0.446
pilD	Acinetobacter baumannii D1279779	48.659	90.941	0.443
pilD	Vibrio campbellii strain DS40M4	44.364	95.819	0.425