Detailed information NTG0553855

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: LZM82_RS00635
• Genome accession: NZ_CP090399
• Coordinates: 129544..130713 (+)
• Length: 389 a.a.
• NCBI ID: WP_000136718.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain PanChol
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 124544..135713

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZM82_RS00600 (LZM82_00600)	-	125381..125851 (-)	471	WP_000224703.1	Dps family protein	-
LZM82_RS00605 (LZM82_00605)	-	126021..126350 (-)	330	WP_001117042.1	DUF2500 domain-containing protein	-
LZM82_RS00610 (LZM82_00610)	-	126555..126923 (+)	369	WP_001289435.1	DUF4145 domain-containing protein	-
LZM82_RS00615 (LZM82_00615)	-	127426..127683 (+)	258	WP_000479993.1	hypothetical protein	-
LZM82_RS00620 (LZM82_00620)	-	127800..128429 (+)	630	WP_000062274.1	lysoplasmalogenase	-
LZM82_RS00625 (LZM82_00625)	-	128478..128744 (-)	267	WP_000645840.1	DUF1145 domain-containing protein	-
LZM82_RS00630 (LZM82_00630)	rsmD	128741..129340 (-)	600	WP_001189766.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
LZM82_RS00635 (LZM82_00635)	pilA	129544..130713 (+)	1170	WP_000136718.1	signal recognition particle-docking protein FtsY	Machinery gene
LZM82_RS00640 (LZM82_00640)	ftsE	130762..131436 (+)	675	WP_000617864.1	cell division ATP-binding protein FtsE	-
LZM82_RS00645 (LZM82_00645)	ftsX	131426..132418 (+)	993	WP_000279340.1	permease-like cell division protein FtsX	-
LZM82_RS00650 (LZM82_00650)	rpoH	132588..133448 (+)	861	WP_000184359.1	RNA polymerase sigma factor RpoH	-
LZM82_RS00655 (LZM82_00655)	sthA	133650..135050 (-)	1401	WP_000529898.1	Si-specific NAD(P)(+) transhydrogenase	-

Sequence

Protein

• Length: 389 a.a.
• Molecular weight: 42574.25 Da
• Isoelectric Point: 4.4974

>NTDB_id=553855 LZM82_RS00635 WP_000136718.1 129544..130713(+) (pilA) [Vibrio cholerae strain PanChol]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQTETALTETETETETETETETETATVEPARIVEQE
KPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDGEALYG
LLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQ
VPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAI
SQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide

• Length: 1170 bp

>NTDB_id=553855 LZM82_RS00635 WP_000136718.1 129544..130713(+) (pilA) [Vibrio cholerae strain PanChol]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCACGTATTGTTGAACAAGAG
AAACCGACCGAAAGCTTCTTTGCGCGCTTAAAGCGCAGTTTGAGCCGCACCAAAGCGAATATTGGCGCTGGCTTCTTTGG
CCTGTTTAAAGGCAAAAAGATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGATTGCCGATGTCGGCATGG
ATACGACCAGCAAAATCATCGCTAATTTGACCGCCAGAGCTTCTCGCCAGCAACTGCGTGATGGGGAAGCGCTGTACGGT
CTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTGATCGACACTGAGAAAAAACCTTACGT
GATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTAAACAGTTCCAAGCGCAAGGCA
AGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTGTGGGGAGAGCGCAATCAA
GTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGAAGCGGCGAAAGCGCGCGG
GATTGACGTGGTGATTGCGGATACCGCAGGCCGTCTGCAAAACAAAAGTAACCTGATGGAAGAGCTGCGCAAGATTGTGC
GCGTGATGAAGAAGATTGATGACAGTGCGCCACATGAAATCATGTTGACGCTGGATGCGGGTACCGGACAAAACGCGATC
AGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGATGGCACCGCTAAAGGTGG
CGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGAAAATTGACGACTTACGTC
CATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (105-166)

• SRP54-type protein, GTPase domain (SRP54) (186-385)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	54	77.121	0.416