Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LY388_RS00305 Genome accession   NZ_CP090386
Coordinates   69674..70678 (-) Length   334 a.a.
NCBI ID   WP_000224436.1    Uniprot ID   Q9KN33
Organism   Vibrio cholerae strain GXFL1-4     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 64674..75678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY388_RS00285 (LY388_00285) glpQ 66146..67213 (+) 1068 WP_080308781.1 glycerophosphodiester phosphodiesterase -
  LY388_RS00290 (LY388_00290) - 67266..67946 (-) 681 WP_042988999.1 Crp/Fnr family transcriptional regulator -
  LY388_RS00295 (LY388_00295) - 68086..68817 (-) 732 WP_234115927.1 nucleoside phosphorylase -
  LY388_RS00300 (LY388_00300) pnuC 68814..69548 (-) 735 WP_407084134.1 nicotinamide riboside transporter PnuC -
  LY388_RS00305 (LY388_00305) cytR 69674..70678 (-) 1005 WP_000224436.1 substrate-binding domain-containing protein Regulator
  LY388_RS00310 (LY388_00310) rbsK 70689..71609 (-) 921 WP_001038380.1 ribokinase -
  LY388_RS00315 (LY388_00315) rbsB 71748..72626 (-) 879 WP_199358414.1 ribose ABC transporter substrate-binding protein RbsB -
  LY388_RS00320 (LY388_00320) rbsC 72687..73670 (-) 984 WP_000107607.1 ribose ABC transporter permease -
  LY388_RS00325 (LY388_00325) rbsA 73685..75187 (-) 1503 WP_199358415.1 ribose ABC transporter ATP-binding protein RbsA -
  LY388_RS00330 (LY388_00330) rbsD 75214..75633 (-) 420 WP_000749918.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37090.71 Da        Isoelectric Point: 7.6774

>NTDB_id=553836 LY388_RS00305 WP_000224436.1 69674..70678(-) (cytR) [Vibrio cholerae strain GXFL1-4]
MATMKDIARLAGVSTSTVSHVINKSRFVSDEIAERVNNAAQQLNYAPSALARSLKMNRTKTIGMLVTTSTNPFFGEVVKG
VERSCYHQGYNLILCNTEGDNQRMKASINTLLQKRVDGLLLMCSTLEGERLDVFDRYPDIPIVVMDWGPILFASDKIQDN
SLQGGYMAAKHLIECGHKEIGCITGPLIRHQAQMRYEGYKRALAEAGIAINPDWIVESDFECEGGYQAFEKLYQRGKLPS
ALFVSNDMMAMGVIQAASQRGLRVPDDLSLIGYDDVHIAKFMTPALTTIHQPKYRLGKAAVDTLLYRLENPDTTAQVVQL
EPTLVVRNSVRKLG

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=553836 LY388_RS00305 WP_000224436.1 69674..70678(-) (cytR) [Vibrio cholerae strain GXFL1-4]
ATGGCCACCATGAAGGATATCGCTCGACTTGCTGGCGTCTCCACTTCAACCGTAAGCCATGTGATCAATAAGAGTCGTTT
TGTGAGTGATGAAATTGCTGAGCGGGTGAATAACGCCGCTCAGCAACTCAATTACGCCCCCTCCGCTCTCGCGCGTAGCC
TCAAAATGAACCGCACCAAAACCATTGGCATGTTAGTGACCACCTCGACCAACCCATTTTTTGGTGAAGTGGTAAAAGGC
GTAGAGCGAAGCTGTTATCACCAAGGCTACAACCTAATCTTGTGCAATACCGAAGGGGATAACCAACGCATGAAAGCCAG
CATCAACACCTTGCTGCAAAAGCGTGTCGATGGTTTGCTGCTGATGTGCTCAACCCTTGAGGGTGAAAGGTTGGATGTGT
TTGACCGCTATCCCGACATCCCGATTGTGGTCATGGACTGGGGCCCGATCCTGTTTGCGAGTGACAAAATTCAAGACAAC
TCACTGCAAGGTGGCTACATGGCGGCCAAGCATCTGATTGAGTGTGGGCATAAAGAGATTGGTTGTATCACAGGTCCGCT
GATTCGCCACCAAGCACAGATGCGTTATGAAGGTTACAAACGTGCGCTCGCGGAAGCGGGAATTGCCATTAATCCAGATT
GGATTGTGGAATCTGACTTCGAGTGTGAAGGCGGCTACCAAGCCTTTGAAAAACTCTATCAGCGTGGCAAATTGCCCAGT
GCTTTGTTTGTTTCCAATGACATGATGGCGATGGGCGTGATTCAAGCCGCTAGCCAACGAGGTTTGCGAGTGCCGGACGA
TCTTTCCTTGATTGGCTACGATGATGTGCATATCGCTAAGTTTATGACCCCTGCGTTAACCACCATCCATCAACCCAAAT
ACCGCCTCGGCAAAGCCGCTGTGGATACCCTGCTTTATCGGTTGGAAAATCCAGACACCACTGCGCAAGTGGTACAGTTA
GAGCCGACTTTAGTGGTGCGTAATAGTGTACGAAAACTCGGCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KN33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.554

99.401

0.383
  cytR Vibrio parahaemolyticus RIMD 2210633

37.952

99.401

0.377