Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LY257_RS03975 Genome accession   NZ_CP090367
Coordinates   811937..812818 (-) Length   293 a.a.
NCBI ID   WP_000481546.1    Uniprot ID   -
Organism   Helicobacter pylori strain CCUG 17875     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 806937..817818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY257_RS03950 (LY257_03910) mobA 807247..807852 (-) 606 WP_000795283.1 molybdenum cofactor guanylyltransferase MobA -
  LY257_RS03955 (LY257_03915) moaA 807940..808905 (+) 966 WP_001863764.1 GTP 3',8-cyclase MoaA -
  LY257_RS03960 (LY257_03920) - 809171..810572 (+) 1402 Protein_761 hypothetical protein -
  LY257_RS03965 (LY257_03925) - 810602..811543 (+) 942 WP_000926362.1 hypothetical protein -
  LY257_RS03970 (LY257_03930) - 811608..811928 (+) 321 WP_000392890.1 YkgJ family cysteine cluster protein -
  LY257_RS03975 (LY257_03935) pilA 811937..812818 (-) 882 WP_000481546.1 signal recognition particle-docking protein FtsY Machinery gene
  LY257_RS03980 (LY257_03940) - 812825..813382 (-) 558 WP_001220371.1 hypothetical protein -
  LY257_RS03985 (LY257_03945) - 813480..814154 (+) 675 WP_080012282.1 5-formyltetrahydrofolate cyclo-ligase -
  LY257_RS03990 (LY257_03950) rny 814132..815643 (+) 1512 WP_025444736.1 ribonuclease Y -
  LY257_RS03995 (LY257_03955) - 815644..816960 (-) 1317 WP_265416449.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32610.88 Da        Isoelectric Point: 7.4169

>NTDB_id=553723 LY257_RS03975 WP_000481546.1 811937..812818(-) (pilA) [Helicobacter pylori strain CCUG 17875]
MFNFFKKIVNKIKGEEAKEKKRENIPKEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGESYYDKTRLK
TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNT
IESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTK
LDGTSKGGAILSVLYELKLPIIYLGMGEKEDDLIAFDEERFIEDLVDAVFVEQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=553723 LY257_RS03975 WP_000481546.1 811937..812818(-) (pilA) [Helicobacter pylori strain CCUG 17875]
ATGTTTAATTTTTTTAAAAAAATTGTCAATAAAATTAAGGGTGAAGAGGCTAAAGAAAAAAAGCGTGAAAATATCCCTAA
AGAGGAATTAGAAGAAATTTTGATTGGCTTTGACATCCAATACGATTTGATAGAGAGCCTATTAAAGCATTTAGGCGATT
TGGTTACGCCTAAGCAATTGGAAGTCGCTTTGTTGCGTTTTGTGCGTGGGGAAAGCTATTATGATAAAACCCGCCTAAAG
ACTATCACTACAAAGCCCTTAGTGCATTTGATCGTGGGGGTTAATGGGGCGGGTAAAACCACAACGATCGCTAAATTAGC
CAAGCTCTCTTTAAAACAGCATAAAAAAGCGCTTTTAGGAGCCGGCGATACCTTTAGAGCGGCTGCAGTCAAACAGCTCC
AATTATGGGGCGAAAAGCTTAACATTCAAGTCATTAGCGCTAAAGAAGGGAGCGATCCAAGCTCTCTAGCTTATAACACC
ATAGAAAGCGCGATCGCTAAAAATATAGATGAAGTTTTTATAGACACCGCCGGGAGGTTACACAACCAGACCAACCTTAA
AAACGAGCTTTCTAAAATCGCGCGCACCTGCTCTAAAGTTTTAAAAGACGCCCCCTTTTATAAATTCCTTATTTTAGACG
GTACGCAAGGGAGTTCTGGGCTAACGCAAGCCAAAATTTTCCATGAGACTTTGGCGTTAGATGGCGTGATTATGACTAAG
CTTGATGGCACTTCTAAAGGCGGAGCGATTTTAAGCGTGCTATATGAGTTGAAATTACCCATTATTTACTTAGGAATGGG
CGAAAAAGAAGACGATTTGATCGCTTTTGATGAAGAACGCTTTATAGAAGACTTGGTTGATGCGGTGTTTGTGGAACAAT
AA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(87-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.199

91.126

0.375