Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   LY257_RS01665 Genome accession   NZ_CP090367
Coordinates   324995..326044 (-) Length   349 a.a.
NCBI ID   WP_000115541.1    Uniprot ID   -
Organism   Helicobacter pylori strain CCUG 17875     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 319995..331044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY257_RS01640 (LY257_01625) rpsL 320004..320411 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  LY257_RS01645 (LY257_01630) rpsG 320427..320894 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  LY257_RS01650 (LY257_01635) fusA 320906..322984 (+) 2079 WP_000101848.1 elongation factor G -
  LY257_RS01655 (LY257_01640) - 323527..324428 (-) 902 Protein_319 aldo/keto reductase -
  LY257_RS01660 (LY257_01645) - 324647..324811 (+) 165 WP_000744175.1 hypothetical protein -
  LY257_RS01665 (LY257_01650) waaF 324995..326044 (-) 1050 WP_000115541.1 lipopolysaccharide heptosyltransferase II Regulator
  LY257_RS01670 (LY257_01655) hisS 326106..327434 (+) 1329 WP_000632432.1 histidine--tRNA ligase -
  LY257_RS01675 (LY257_01660) asd 327421..328461 (+) 1041 WP_054833672.1 aspartate-semialdehyde dehydrogenase -
  LY257_RS01680 (LY257_01665) - 328875..329921 (+) 1047 WP_203028569.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39507.16 Da        Isoelectric Point: 9.3446

>NTDB_id=553715 LY257_RS01665 WP_000115541.1 324995..326044(-) (waaF) [Helicobacter pylori strain CCUG 17875]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKNHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHTLLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=553715 LY257_RS01665 WP_000115541.1 324995..326044(-) (waaF) [Helicobacter pylori strain CCUG 17875]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAAAACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTATTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
TGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGTGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTATTGAACCACCATTTAAGCTGTGCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAAAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.218

99.713

0.381