Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   LXN03_RS26845 Genome accession   NZ_CP090348
Coordinates   5786489..5787013 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PA8329     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5781489..5792013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN03_RS26830 (LXN03_26830) aroB 5782605..5783711 (-) 1107 WP_004352494.1 3-dehydroquinate synthase -
  LXN03_RS26835 (LXN03_26835) aroK 5783761..5784279 (-) 519 WP_003095833.1 shikimate kinase AroK -
  LXN03_RS26840 (LXN03_26840) pilQ 5784291..5786435 (-) 2145 WP_003103267.1 type 4a pilus secretin PilQ Machinery gene
  LXN03_RS26845 (LXN03_26845) comL/pilP 5786489..5787013 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  LXN03_RS26850 (LXN03_26850) pilO 5787010..5787633 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  LXN03_RS26855 (LXN03_26855) pilN 5787630..5788226 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  LXN03_RS26860 (LXN03_26860) pilM 5788226..5789290 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  LXN03_RS26865 (LXN03_26865) - 5789475..5791946 (+) 2472 WP_004352493.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=553688 LXN03_RS26845 WP_003095836.1 5786489..5787013(-) (comL/pilP) [Pseudomonas aeruginosa strain PA8329]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=553688 LXN03_RS26845 WP_003095836.1 5786489..5787013(-) (comL/pilP) [Pseudomonas aeruginosa strain PA8329]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362