Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   NY40_RS00855 Genome accession   NZ_AP014523
Coordinates   170310..171359 (+) Length   349 a.a.
NCBI ID   WP_041049736.1    Uniprot ID   -
Organism   Helicobacter pylori NY40     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 165310..176359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY40_RS00835 (NY40_0170) - 165352..166095 (+) 744 WP_041049727.1 carbonic anhydrase -
  NY40_RS00840 (NY40_0171) - 166326..167465 (-) 1140 WP_041049729.1 DUF874 family protein -
  NY40_RS00845 (NY40_0172) asd 167893..168933 (-) 1041 WP_041049731.1 aspartate-semialdehyde dehydrogenase -
  NY40_RS00850 (NY40_0173) hisS 168920..170248 (-) 1329 WP_041049734.1 histidine--tRNA ligase -
  NY40_RS00855 (NY40_0174) waaF 170310..171359 (+) 1050 WP_041049736.1 lipopolysaccharide heptosyltransferase II Regulator
  NY40_RS08855 - 171579..171689 (+) 111 Protein_160 lipopolysaccharide heptosyltransferase II -
  NY40_RS09520 (NY40_0175) - 171880..172107 (-) 228 WP_414842393.1 flagellar protein -
  NY40_RS09525 (NY40_0176) - 172104..172256 (-) 153 WP_414842394.1 hypothetical protein -
  NY40_RS00865 (NY40_0177) fusA 172849..174927 (-) 2079 WP_000101878.1 elongation factor G -
  NY40_RS00870 (NY40_0178) rpsG 174939..175406 (-) 468 WP_001254355.1 30S ribosomal protein S7 -
  NY40_RS00875 (NY40_0179) rpsL 175422..175829 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39515.21 Da        Isoelectric Point: 9.4536

>NTDB_id=55368 NY40_RS00855 WP_041049736.1 170310..171359(+) (waaF) [Helicobacter pylori NY40]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDMAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFDLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAAALLEKGHEIYFFGAKEDAIVSEEILKSVKSLLKNPLLSH
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHAAASTKTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLEAAHILLEEP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=55368 NY40_RS00855 WP_041049736.1 170310..171359(+) (waaF) [Helicobacter pylori NY40]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGTCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTACTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATGGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCCAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAACTGGATCAAAAAAGCGTTTTACCCTTA
AAGTTAGCCTTTGACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTATGCTGAAGTTGCGGCTGCTTTGTTAGAAAAAGGGCACGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAATCCGTTAAAAGCTTATTGAAAAACCCCTTATTATCCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGCAGCCGCTAGCACGAAAACCCCCCTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCATCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAACGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACATTCTTTTAGA
AGAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.647

97.421

0.367

Multiple sequence alignment