Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   J5Z55_RS22910 Genome accession   NZ_CP072473
Coordinates   4425426..4426478 (-) Length   350 a.a.
NCBI ID   WP_116073650.1    Uniprot ID   -
Organism   Priestia aryabhattai strain LAD     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4420426..4431478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5Z55_RS22870 (J5Z55_22870) - 4421441..4422265 (+) 825 WP_195781864.1 YqhG family protein -
  J5Z55_RS22875 (J5Z55_22875) - 4422290..4422475 (-) 186 WP_013059170.1 YqzE family protein -
  J5Z55_RS22880 (J5Z55_22880) comGG 4422519..4422893 (-) 375 WP_195781863.1 competence type IV pilus minor pilin ComGG -
  J5Z55_RS22885 (J5Z55_22885) comGF 4422883..4423320 (-) 438 WP_195781862.1 competence type IV pilus minor pilin ComGF -
  J5Z55_RS22890 (J5Z55_22890) - 4423317..4423655 (-) 339 WP_195781861.1 type II secretion system protein -
  J5Z55_RS22895 (J5Z55_22895) comGD 4423639..4424121 (-) 483 WP_245210632.1 competence type IV pilus minor pilin ComGD -
  J5Z55_RS22900 (J5Z55_22900) comGC 4424063..4424374 (-) 312 WP_016765560.1 competence type IV pilus major pilin ComGC -
  J5Z55_RS22905 (J5Z55_22905) comGB 4424389..4425435 (-) 1047 WP_209150663.1 competence type IV pilus assembly protein ComGB -
  J5Z55_RS22910 (J5Z55_22910) comGA 4425426..4426478 (-) 1053 WP_116073650.1 competence type IV pilus ATPase ComGA Machinery gene
  J5Z55_RS22915 (J5Z55_22915) - 4426749..4427132 (-) 384 WP_013059178.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  J5Z55_RS22920 (J5Z55_22920) - 4427394..4427630 (+) 237 WP_013059179.1 DUF2626 domain-containing protein -
  J5Z55_RS22925 (J5Z55_22925) - 4427668..4428300 (-) 633 WP_116073652.1 MBL fold metallo-hydrolase -
  J5Z55_RS22930 (J5Z55_22930) - 4428509..4428685 (+) 177 WP_013059181.1 DUF2759 domain-containing protein -
  J5Z55_RS22935 (J5Z55_22935) - 4428721..4429623 (-) 903 WP_195781859.1 M14 family metallocarboxypeptidase -
  J5Z55_RS22940 (J5Z55_22940) - 4429735..4430703 (-) 969 WP_209150664.1 ROK family glucokinase -
  J5Z55_RS22945 (J5Z55_22945) - 4430706..4430912 (-) 207 WP_013059184.1 YqgQ family protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39610.99 Da        Isoelectric Point: 9.0586

>NTDB_id=553672 J5Z55_RS22910 WP_116073650.1 4425426..4426478(-) (comGA) [Priestia aryabhattai strain LAD]
MTEIEQFATYVIRDACECRSSDVHIVPRKKDAVIQLRIDQELILKRVISKEMSERLISHFKFLGGMDIGERRKPQNGALT
TSIDHYQVNLRLSTLPTSHDESLVIRLLPHQQSTSLKHLSLFPEHTKKLISLLKFSHGLIIFTGPTGSGKTTTLYTLLHE
VKHLFNRNVITLEDPIEKPSETVLQVQVNERAGITYTTGLKAILRHDPDIIMVGEIRDSETAKIAVRAALTGHLVLTTMH
TKDTKGSLYRLLEFGVSFQEMEQTLVAVAAQRLVEIRCPLCSGKCHPACKKMRKHRQSSIYELLYGKELSAVMREVKGEN
ADYDYKTLRDVILKGIALGYLYPHSLDGWG

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=553672 J5Z55_RS22910 WP_116073650.1 4425426..4426478(-) (comGA) [Priestia aryabhattai strain LAD]
TTGACCGAAATTGAACAGTTTGCTACTTACGTTATACGAGATGCATGTGAGTGCCGAAGTTCTGATGTGCATATTGTGCC
CCGAAAGAAAGATGCTGTGATTCAGCTGCGAATTGACCAGGAGCTTATTTTAAAGAGGGTTATTTCAAAGGAAATGTCTG
AACGGCTCATTTCGCATTTTAAATTTTTAGGGGGAATGGATATTGGCGAGCGCAGAAAACCTCAAAATGGTGCATTGACC
ACTTCCATTGATCACTATCAAGTAAATTTGCGTTTATCAACTCTTCCTACTTCTCATGATGAAAGTCTTGTTATTCGGCT
TTTGCCTCATCAACAATCTACATCTCTCAAACATTTATCTCTTTTTCCTGAACATACTAAAAAGCTTATTTCTCTCTTGA
AATTCTCTCATGGATTAATTATTTTTACCGGTCCTACAGGATCAGGTAAAACCACTACTCTATATACTCTTTTACACGAA
GTAAAGCACCTTTTTAATCGAAATGTTATTACACTAGAAGATCCTATTGAAAAACCGAGTGAAACCGTGCTTCAAGTGCA
GGTAAATGAACGGGCGGGGATTACGTACACGACTGGTTTAAAAGCTATATTGCGCCATGATCCAGACATTATCATGGTGG
GAGAAATAAGAGATAGTGAGACTGCCAAAATTGCTGTGAGAGCAGCGCTTACCGGACACTTGGTTTTGACAACGATGCAT
ACTAAAGATACAAAAGGATCTTTGTACAGGCTGCTTGAGTTTGGCGTTAGCTTTCAAGAAATGGAACAGACTCTTGTAGC
AGTAGCTGCACAGCGCCTTGTAGAAATTCGCTGTCCGCTGTGTTCCGGAAAATGCCACCCCGCTTGTAAAAAAATGAGGA
AGCATCGTCAGTCTAGCATATACGAATTGCTTTATGGCAAGGAGCTTAGCGCAGTGATGAGAGAAGTGAAAGGAGAAAAT
GCGGATTATGATTATAAGACGCTCCGAGATGTTATTCTAAAAGGAATTGCGCTAGGCTATTTATATCCGCATTCGCTAGA
CGGATGGGGGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(12-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

58.571

100

0.586