Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   J5Z55_RS19930 Genome accession   NZ_CP072473
Coordinates   3842305..3842679 (+) Length   124 a.a.
NCBI ID   WP_229754616.1    Uniprot ID   -
Organism   Priestia aryabhattai strain LAD     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3837305..3847679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5Z55_RS19910 (J5Z55_19910) - 3837642..3838313 (-) 672 WP_195782177.1 response regulator transcription factor -
  J5Z55_RS19915 (J5Z55_19915) - 3838639..3839457 (+) 819 WP_013058559.1 phytoene/squalene synthase family protein -
  J5Z55_RS19920 (J5Z55_19920) - 3839493..3841442 (-) 1950 WP_209150526.1 FUSC family protein -
  J5Z55_RS19925 (J5Z55_19925) - 3841599..3841859 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  J5Z55_RS19930 (J5Z55_19930) nucA/comI 3842305..3842679 (+) 375 WP_229754616.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  J5Z55_RS19935 (J5Z55_19935) comJ 3842715..3843122 (+) 408 WP_209150528.1 competence protein ComJ -
  J5Z55_RS19940 (J5Z55_19940) helD 3843154..3845472 (-) 2319 WP_209150529.1 RNA polymerase recycling motor HelD -
  J5Z55_RS31655 - 3845716..3845841 (-) 126 WP_016765178.1 hypothetical protein -
  J5Z55_RS19945 (J5Z55_19945) - 3845981..3846499 (-) 519 WP_245210626.1 enoyl-CoA hydratase/isomerase family protein -
  J5Z55_RS19950 (J5Z55_19950) - 3846739..3847107 (+) 369 WP_195782172.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13675.93 Da        Isoelectric Point: 4.2601

>NTDB_id=553666 J5Z55_RS19930 WP_229754616.1 3842305..3842679(+) (nucA/comI) [Priestia aryabhattai strain LAD]
MGHAAFLAPEKTEAEINYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEANREESLKGYPTKTGYDRDEWPMA
MCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=553666 J5Z55_RS19930 WP_229754616.1 3842305..3842679(+) (nucA/comI) [Priestia aryabhattai strain LAD]
ATGGGACATGCGGCTTTTTTAGCTCCTGAAAAAACGGAAGCTGAAATAAACTATGATGCGACGCTTTATTTTCCGTTAGA
CCGATATCCTGAAACGGGTGATCATATTCGTGACGCGATTGCCGCTGGGCACTCTTCCGTTTGCACAATTGATCGCGACG
GTGCTGAAGCGAACCGGGAAGAATCGCTGAAAGGATATCCAACAAAAACAGGCTATGACCGTGATGAATGGCCAATGGCT
ATGTGCGAAGAAGGCGGAGCAGGAGCTGACATTCGCTATATTTCACCTTCTGATAACCGGGGAGCCGGCTCGTGGGTTGG
AAATCAATTAGAACAGTACCCAGATGGTACGCGCGTACAATTTATCGTCCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(30-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.227

95.968

0.645