Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J5Z55_RS00535 Genome accession   NZ_CP072473
Coordinates   99740..101116 (+) Length   458 a.a.
NCBI ID   WP_013054899.1    Uniprot ID   A0A8D4J4E8
Organism   Priestia aryabhattai strain LAD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 94740..106116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5Z55_RS00515 (J5Z55_00515) - 95032..95493 (+) 462 WP_013054895.1 CtsR family transcriptional regulator -
  J5Z55_RS00520 (J5Z55_00520) - 95535..96077 (+) 543 WP_195781466.1 UvrB/UvrC motif-containing protein -
  J5Z55_RS00525 (J5Z55_00525) - 96081..97154 (+) 1074 WP_013054897.1 protein arginine kinase -
  J5Z55_RS00530 (J5Z55_00530) clpC 97175..99616 (+) 2442 WP_195781465.1 ATP-dependent protease ATP-binding subunit ClpC -
  J5Z55_RS00535 (J5Z55_00535) radA 99740..101116 (+) 1377 WP_013054899.1 DNA repair protein RadA Machinery gene
  J5Z55_RS00540 (J5Z55_00540) disA 101120..102199 (+) 1080 WP_013054900.1 DNA integrity scanning diadenylate cyclase DisA -
  J5Z55_RS00545 (J5Z55_00545) - 102347..103444 (+) 1098 WP_195781464.1 PIN/TRAM domain-containing protein -
  J5Z55_RS00550 (J5Z55_00550) ispD 103470..104165 (+) 696 WP_209150822.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  J5Z55_RS00555 (J5Z55_00555) ispF 104178..104657 (+) 480 WP_013054903.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49474.82 Da        Isoelectric Point: 6.9049

>NTDB_id=553640 J5Z55_RS00535 WP_013054899.1 99740..101116(+) (radA) [Priestia aryabhattai strain LAD]
MAKRKTKFACQHCGYESAKWMGKCPGCGSWNSMVEEMEETKSSRRGAFSGATASKVQKPQSITAIESTTEPRIFTPSAEL
NRVLGGGIVRGSLVLIGGDPGIGKSTLLLQTSAQLAMKQNKVLYISGEESTKQTKLRADRLGVKAEELYVHAETNLELIL
EAISSMQPDFVVIDSIQTIYHADVTSAPGSVSQVRECTAELMRVAKTNGIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYF
EGERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVLNPSEIFLEERSQGAAGSVVVASMEGTRPVLVELQALISPTSF
GNPRRMATGVDHNRVSLIMAVLEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDAASSATDVIVGEVGLT
GEVRRVSRIEQRVQEAVKLGFQRIIIPEKNLGGWKVPDGIDVIGVSTVAEALQYTLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=553640 J5Z55_RS00535 WP_013054899.1 99740..101116(+) (radA) [Priestia aryabhattai strain LAD]
ATGGCCAAACGAAAAACAAAATTTGCATGTCAGCATTGCGGATATGAATCAGCAAAATGGATGGGGAAATGTCCCGGATG
CGGAAGCTGGAATTCTATGGTAGAAGAAATGGAAGAAACGAAATCATCACGCCGAGGAGCTTTTTCCGGAGCTACTGCTT
CTAAAGTTCAAAAACCTCAGTCAATTACAGCGATTGAATCTACAACAGAACCACGAATTTTTACACCTTCTGCAGAGTTA
AATCGTGTATTAGGAGGAGGTATTGTCAGAGGGTCACTCGTTTTAATAGGGGGAGATCCGGGTATCGGAAAGTCTACTTT
ACTTTTGCAAACCTCCGCGCAGTTAGCAATGAAACAAAATAAAGTACTATATATTTCGGGAGAGGAATCAACCAAACAAA
CGAAGTTAAGAGCGGATAGGCTAGGTGTAAAAGCTGAAGAGCTTTATGTTCACGCAGAAACAAACTTAGAATTAATACTA
GAGGCCATCTCAAGCATGCAGCCTGATTTTGTGGTAATTGATTCAATTCAAACCATTTACCATGCTGATGTGACATCAGC
GCCAGGAAGCGTCTCACAGGTGCGAGAGTGTACGGCTGAACTAATGCGTGTTGCTAAAACGAATGGAATTGCCATCTTTA
TTGTGGGTCATGTAACGAAAGAAGGGGCCATTGCAGGTCCAAGACTTCTTGAACATATGGTGGATACGGTTCTTTATTTT
GAAGGAGAGCGCCATCATACGTATCGTATATTAAGAGCGGTTAAGAACCGGTTTGGATCTACAAATGAAATGGGCATTTT
TGAAATGAAAGAAAGTGGGCTAGAAGAAGTATTGAATCCATCTGAAATCTTTCTAGAAGAACGATCTCAGGGAGCGGCAG
GGTCGGTTGTTGTCGCTTCAATGGAGGGGACAAGACCTGTATTAGTAGAACTGCAGGCGCTAATCAGTCCAACGAGCTTT
GGAAACCCTAGAAGAATGGCGACGGGAGTAGATCATAATCGCGTTTCGCTTATCATGGCTGTCTTAGAAAAGCGTGTAGG
AATGCTGCTGCAGAATCAAGATGCTTATTTAAAAGTAGCAGGTGGAGTGAAATTAGATGAACCAGCAATCGATTTAGCTG
TAGCCGTTAGTATTGCTTCAAGCTTCAGAGATGCTGCTTCTAGCGCTACAGATGTTATTGTAGGAGAGGTAGGATTAACA
GGTGAAGTACGCCGAGTATCTAGAATTGAACAGCGCGTTCAAGAAGCGGTAAAATTAGGGTTCCAACGAATTATTATCCC
GGAGAAAAATTTAGGAGGATGGAAAGTCCCAGATGGTATTGATGTGATTGGGGTATCAACAGTAGCGGAGGCTCTGCAAT
ATACATTAGGAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

75.817

100

0.76
  radA Streptococcus pneumoniae Rx1

63.135

98.908

0.624
  radA Streptococcus pneumoniae D39

63.135

98.908

0.624
  radA Streptococcus pneumoniae R6

63.135

98.908

0.624
  radA Streptococcus pneumoniae TIGR4

63.135

98.908

0.624
  radA Streptococcus mitis NCTC 12261

63.135

98.908

0.624
  radA Streptococcus mitis SK321

63.135

98.908

0.624