Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   LXN03_RS09120 Genome accession   NZ_CP090348
Coordinates   1955044..1955373 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA8329     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1950044..1960373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN03_RS09105 (LXN03_09105) - 1950744..1951703 (+) 960 WP_004350973.1 UDP-glucose 4-epimerase family protein -
  LXN03_RS09110 (LXN03_09110) - 1951700..1952725 (+) 1026 WP_004350972.1 MraY family glycosyltransferase -
  LXN03_RS09115 (LXN03_09115) - 1952856..1954853 (+) 1998 WP_009313767.1 polysaccharide biosynthesis protein -
  LXN03_RS09120 (LXN03_09120) comEA/comE1 1955044..1955373 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  LXN03_RS09130 (LXN03_09130) - 1955590..1956786 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  LXN03_RS09135 (LXN03_09135) uvrB 1956974..1958986 (+) 2013 WP_004350967.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=553632 LXN03_RS09120 WP_003091430.1 1955044..1955373(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA8329]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=553632 LXN03_RS09120 WP_003091430.1 1955044..1955373(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA8329]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385