Detailed information NTG0553601

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: IUD23_RS10640
• Genome accession: NZ_CP090316
• Coordinates: 2349221..2350414 (+)
• Length: 397 a.a.
• NCBI ID: WP_038229334.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. morus strain Riv16
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2344221..2355414

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUD23_RS10620 (IUD23_10620)	-	2344389..2345591 (-)	1203	WP_080679682.1	anthranilate synthase component I family protein	-
IUD23_RS10625 (IUD23_10625)	-	2346226..2347032 (+)	807	WP_004572888.1	TatD family hydrolase	-
IUD23_RS10630 (IUD23_10630)	-	2347246..2347860 (-)	615	WP_080679683.1	HNH endonuclease	-
IUD23_RS10635 (IUD23_10635)	-	2348176..2348649 (-)	474	WP_004572890.1	hypothetical protein	-
IUD23_RS10640 (IUD23_10640)	pilA	2349221..2350414 (+)	1194	WP_038229334.1	signal recognition particle-docking protein FtsY	Machinery gene
IUD23_RS10645 (IUD23_10645)	mutY	2350514..2351563 (+)	1050	WP_038229336.1	A/G-specific adenine glycosylase	-
IUD23_RS10650 (IUD23_10650)	-	2351598..2351870 (+)	273	WP_011097829.1	oxidative damage protection protein	-
IUD23_RS10655 (IUD23_10655)	-	2351924..2352457 (+)	534	WP_230577690.1	DUF2726 domain-containing protein	-
IUD23_RS10660 (IUD23_10660)	-	2352586..2353320 (+)	735	WP_004572895.1	YebC/PmpR family DNA-binding transcriptional regulator	-
IUD23_RS10665 (IUD23_10665)	ruvC	2353440..2353961 (+)	522	WP_011097831.1	crossover junction endodeoxyribonuclease RuvC	-
IUD23_RS10670 (IUD23_10670)	ruvA	2354047..2354631 (+)	585	WP_038229340.1	Holliday junction branch migration protein RuvA	-

Sequence

Protein

• Length: 397 a.a.
• Molecular weight: 42796.93 Da
• Isoelectric Point: 6.7679

>NTDB_id=553601 IUD23_RS10640 WP_038229334.1 2349221..2350414(+) (pilA) [Xylella fastidiosa subsp. morus strain Riv16]
MLSFLRLKKPTNAISDNERSKYSAEEMAAAFPKAPSLDDAPDQEQTSTTPLLSSADQPALLTHSTSSAFTELAISTGDDT
SGASTPTVSVDKPNWRERLRGSLFARNINALFSNNPRLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQ
TLLAALRNELITILRPVSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQLQAWG
ERNSITVIAQKGPNADAASVVYDALQAAKARSTEVLIADTAGRLHTQIGLMNELSKIRRVLGKLDSTAPHEVLMVIDGTT
GQNALSQLRQFHAAVNVTCLVVTKLDGTAKGGVVFTLAREFGIPIHFISIGEQLEDMHFFDPEAFVDALLPKTLGNA

Nucleotide

• Length: 1194 bp

>NTDB_id=553601 IUD23_RS10640 WP_038229334.1 2349221..2350414(+) (pilA) [Xylella fastidiosa subsp. morus strain Riv16]
ATGTTAAGCTTTCTACGCCTCAAGAAGCCCACCAATGCCATCAGCGACAACGAGCGGAGCAAATACAGTGCTGAAGAGAT
GGCGGCTGCCTTTCCAAAAGCTCCTTCGTTGGATGATGCTCCAGACCAAGAGCAAACTAGCACCACGCCATTGCTATCTT
CAGCAGATCAGCCTGCGTTACTGACCCACTCTACGAGTAGTGCCTTTACAGAGCTAGCAATCTCCACTGGCGACGACACA
TCGGGGGCGAGTACCCCAACTGTTTCGGTGGATAAACCCAATTGGCGTGAGCGCCTACGTGGCAGTCTCTTCGCGCGGAA
CATCAATGCTTTATTCTCGAATAACCCGCGTTTGGATGAAAATCTGCTTGATGAGATTGAAACCGCGTTGATTACGGCTG
ATGTAGGCGTGTCTACGACTAATGCCATAGTTGACGGTTTGCGTAAACGTATGAAAGCACGTGAATTCGCTGATATCCAA
ACACTGTTAGCTGCATTACGTAATGAATTAATCACGATACTGCGTCCTGTTTCTAAACCACTGATCGTCAAACGCGATGC
ACTTCCATTTGTGTTTCTTGTTGTAGGTGTCAATGGTGTTGGTAAGACCACAACAATCGGCAAGTTGGCGAAGTGGTTCA
AGAGGGATGGCTACAGCTTGATGTTGGCTGCCGGTGATACCTTCCGTGCTGCCGCTGTCGCGCAGTTACAGGCATGGGGC
GAGCGTAATAGTATTACGGTGATCGCACAAAAAGGACCGAATGCAGATGCTGCTTCGGTAGTCTATGATGCGCTGCAAGC
AGCCAAGGCGCGTAGCACCGAGGTGCTCATCGCCGATACCGCAGGCCGCCTGCATACCCAGATTGGTTTAATGAACGAGT
TGAGCAAAATCCGCCGTGTGCTCGGTAAGCTTGATAGCACCGCACCACATGAAGTACTGATGGTGATTGACGGTACTACT
GGGCAAAATGCGCTTTCGCAATTACGCCAATTTCATGCTGCCGTGAACGTCACTTGTCTTGTGGTAACCAAGCTCGATGG
CACTGCCAAGGGCGGGGTAGTCTTCACGTTGGCACGTGAATTTGGCATTCCAATCCACTTCATCAGCATAGGCGAGCAGC
TGGAAGATATGCATTTTTTTGACCCTGAGGCATTCGTAGACGCGCTACTGCCAAAAACATTAGGAAATGCTTAA

Domains

Predicted by InterProScan.

• SRP54-type protein, GTPase domain (SRP54) (189-390)

• SRP54-type protein, helical bundle domain (SRP54_N) (105-170)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	41.551	90.932	0.378