Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   IUD23_RS10515 Genome accession   NZ_CP090316
Coordinates   2327702..2329702 (+) Length   666 a.a.
NCBI ID   WP_038229324.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. morus strain Riv16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2322702..2334702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUD23_RS10495 (IUD23_10495) - 2323391..2323783 (-) 393 WP_004085448.1 HU family DNA-binding protein -
  IUD23_RS10500 (IUD23_10500) - 2324452..2324946 (+) 495 WP_004085447.1 SgcJ/EcaC family oxidoreductase -
  IUD23_RS10505 (IUD23_10505) msrA 2325050..2325700 (+) 651 WP_004085446.1 peptide-methionine (S)-S-oxide reductase MsrA -
  IUD23_RS10510 (IUD23_10510) - 2326296..2327594 (+) 1299 WP_004085445.1 dicarboxylate/amino acid:cation symporter -
  IUD23_RS10515 (IUD23_10515) recP/tkt 2327702..2329702 (+) 2001 WP_038229324.1 transketolase Machinery gene
  IUD23_RS10520 (IUD23_10520) rsmG 2329752..2330390 (-) 639 WP_038229326.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  IUD23_RS10525 (IUD23_10525) - 2330616..2331209 (-) 594 WP_038229328.1 4'-phosphopantetheinyl transferase superfamily protein -
  IUD23_RS10530 (IUD23_10530) xth 2331337..2332125 (-) 789 WP_027700709.1 exodeoxyribonuclease III -
  IUD23_RS10535 (IUD23_10535) - 2332697..2334354 (-) 1658 Protein_2066 Tn3 family transposase -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 72992.50 Da        Isoelectric Point: 6.3865

>NTDB_id=553600 IUD23_RS10515 WP_038229324.1 2327702..2329702(+) (recP/tkt) [Xylella fastidiosa subsp. morus strain Riv16]
MTKPTRRQLANAIRFLAADAVQAAHSGHPGMPMGMADIAEVLWNDFLRHNPNNPNWFNRDRFVLSNGHGSMLQYALLHLS
GYDLPLDELKRFRQLHSKTAGHPERSETPGIETTTGPLGQGFANAVGFALAEKLLAQRYNRPEHLIVDHRTWVFMGDGCL
MEGISHEAAALAGTWNLGKLICFWDDNNISIDGNTAGWFTEDTPARFEAYGWHVIRDIDGHDAEKIATAIQAAVAQENKP
SLLCCRTVIGFGSPNKAGKESSHGAPLGAEELEATRKMLDWPYGPFEIPSEIYDGWRANGTGMLRQAEWEQAFDNYARQY
PKEAAELTRRSHAELPTDFLSQLDAYIAKVHAAGPCIASRKASQMAIEAFAPLLPELIGGSADLAHSNLTLWKGSQTVVG
DSPNANYAYYGVREFGMSAIANGLALHGGFIPFDATFLVFSDYARNAVRMSALIPAHVIHVYTHDSIGLGEDGPTHQPVE
HLAALRYIPNNDVWRPCDAVESAVAWKAAITRNNGPSCLVFSRQNLPHQPRHDAQLEQIARGGYILADAASSIPDIILIA
TGSEVSLAIEAKKTLDAMQLKTRVVSMPSTNVFERQDPTYRESVLPSKVHKRVAIEAGVTGFWWQYVGLHGAVIGLDTFG
ASAPADVLYKHFNITAEHVVEVAKAL

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=553600 IUD23_RS10515 WP_038229324.1 2327702..2329702(+) (recP/tkt) [Xylella fastidiosa subsp. morus strain Riv16]
ATGACCAAACCCACACGCCGCCAGTTGGCCAACGCAATCCGTTTCCTTGCAGCTGATGCAGTACAAGCTGCTCATTCTGG
GCACCCGGGCATGCCGATGGGAATGGCAGATATCGCTGAAGTTCTTTGGAACGATTTCCTACGCCATAACCCTAACAACC
CGAACTGGTTTAACCGTGACCGCTTCGTTCTTTCCAACGGTCACGGCTCGATGTTGCAATATGCATTGCTGCATTTAAGT
GGCTATGACCTGCCGTTAGATGAACTCAAGCGATTCCGTCAGCTGCATAGCAAAACAGCTGGTCATCCTGAGCGTAGCGA
GACCCCAGGGATTGAGACGACTACTGGGCCGCTTGGTCAGGGGTTTGCTAACGCAGTGGGTTTTGCCTTGGCCGAGAAAC
TTCTAGCGCAACGCTACAACCGTCCGGAACATCTCATTGTCGATCACCGCACCTGGGTGTTCATGGGCGACGGCTGTCTC
ATGGAAGGTATCTCACATGAAGCAGCCGCGCTGGCGGGTACCTGGAACTTAGGCAAATTGATTTGTTTCTGGGATGACAA
CAACATTTCTATTGATGGCAATACTGCGGGTTGGTTTACCGAAGACACTCCAGCACGATTCGAAGCCTATGGTTGGCATG
TAATCCGCGATATTGATGGCCATGATGCGGAAAAAATCGCAACCGCAATCCAAGCCGCCGTTGCTCAAGAGAACAAGCCC
TCATTGCTATGCTGCCGTACCGTGATCGGATTTGGCTCACCAAATAAAGCAGGTAAAGAATCTTCGCATGGTGCCCCACT
AGGAGCGGAGGAACTGGAGGCCACGCGTAAGATGTTGGATTGGCCATACGGCCCGTTCGAGATTCCGTCCGAGATTTACG
ATGGTTGGCGTGCTAACGGCACAGGCATGCTACGTCAAGCTGAGTGGGAGCAGGCGTTTGACAACTATGCCCGACAGTAT
CCTAAGGAAGCAGCTGAATTAACCCGGCGCTCCCACGCTGAGTTACCTACTGATTTTCTCAGCCAATTAGATGCTTACAT
TGCCAAAGTTCACGCTGCGGGGCCCTGCATTGCTTCCCGTAAAGCATCGCAGATGGCGATTGAAGCATTTGCACCTTTAC
TTCCCGAGTTAATTGGTGGCTCGGCTGACTTGGCACATTCCAATCTAACGTTGTGGAAAGGGAGCCAAACAGTTGTTGGC
GACTCCCCCAACGCAAACTATGCCTATTACGGCGTACGTGAGTTTGGGATGAGTGCCATCGCAAATGGACTTGCATTGCA
TGGCGGCTTTATCCCCTTCGACGCGACATTTCTAGTATTCAGTGATTACGCCCGCAACGCAGTGCGTATGAGTGCATTGA
TCCCAGCACATGTGATTCACGTTTACACACATGATTCAATCGGACTTGGCGAAGACGGTCCAACGCATCAGCCTGTTGAA
CACTTAGCCGCACTGCGCTATATCCCCAACAATGACGTGTGGCGTCCCTGTGACGCAGTTGAATCTGCAGTAGCATGGAA
GGCGGCGATCACTCGCAATAACGGCCCGAGCTGTTTGGTGTTCAGCCGCCAAAACTTGCCGCACCAACCGCGCCATGATG
CACAACTTGAGCAGATTGCACGCGGTGGCTATATCTTGGCTGACGCTGCGAGCAGCATCCCAGACATCATTTTGATCGCG
ACCGGCTCGGAAGTCAGCCTAGCGATTGAAGCGAAAAAGACACTTGATGCGATGCAGCTAAAAACACGCGTGGTCTCGAT
GCCATCGACCAATGTGTTTGAACGTCAGGACCCCACCTACCGTGAGTCGGTCCTTCCATCGAAAGTCCACAAGCGTGTTG
CAATAGAAGCTGGCGTCACTGGTTTTTGGTGGCAATACGTAGGGTTACATGGTGCCGTGATTGGCCTGGACACCTTTGGT
GCATCAGCCCCAGCGGATGTGTTGTACAAACATTTTAATATCACTGCAGAACACGTTGTCGAAGTCGCAAAGGCACTTTA
G

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(357-528)

Transketolase, C-terminal domain (Transketolase_C)

(554-659)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

49.245

99.399

0.489