Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IUD23_RS10165 Genome accession   NZ_CP090316
Coordinates   2236667..2238103 (-) Length   478 a.a.
NCBI ID   WP_038229256.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. morus strain Riv16     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2231667..2243103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUD23_RS10135 (IUD23_10135) - 2231969..2232535 (+) 567 WP_038229232.1 recombinase family protein -
  IUD23_RS10140 (IUD23_10140) - 2232620..2232877 (-) 258 WP_038229233.1 hypothetical protein -
  IUD23_RS10145 (IUD23_10145) - 2233145..2233570 (-) 426 WP_038229235.1 antirestriction protein -
  IUD23_RS10150 (IUD23_10150) - 2233694..2234888 (-) 1195 Protein_1990 topoisomerase -
  IUD23_RS10155 (IUD23_10155) - 2234854..2235852 (-) 999 WP_004085391.1 MBL fold metallo-hydrolase -
  IUD23_RS10160 (IUD23_10160) - 2235984..2236670 (-) 687 WP_038229254.1 TIGR02453 family protein -
  IUD23_RS10165 (IUD23_10165) sbcB 2236667..2238103 (-) 1437 WP_038229256.1 exodeoxyribonuclease I Machinery gene
  IUD23_RS10170 (IUD23_10170) - 2238291..2239568 (+) 1278 WP_038229258.1 hypothetical protein -
  IUD23_RS10175 (IUD23_10175) - 2240536..2242173 (+) 1638 WP_038229363.1 Na+/H+ antiporter -
  IUD23_RS10180 (IUD23_10180) - 2242548..2243096 (+) 549 WP_038229261.1 hypothetical protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 54976.20 Da        Isoelectric Point: 6.5044

>NTDB_id=553598 IUD23_RS10165 WP_038229256.1 2236667..2238103(-) (sbcB) [Xylella fastidiosa subsp. morus strain Riv16]
MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGITPQHAQREGINEAAAFA
HIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRNGNSRWDLLDMLRLMHAVRPEGIHWPTREDGAPSFKL
EHLALANHAREGTAHEALSDVYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV
LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNKVPALIAWNHLRASDFTRLGM
DPSMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADASLYDGFLTEEDRRLLPQLRASSPDTLVTFEQRLRDPRLIEL
LFRYRARNFPETLSCDEQTRWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSELSRTL

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=553598 IUD23_RS10165 WP_038229256.1 2236667..2238103(-) (sbcB) [Xylella fastidiosa subsp. morus strain Riv16]
ATGCCGCCCAGCTTTCTGTTCTACGACTTAGAAACTTTCGGTCAGGACCCCCGTCGTACCCGCATCGCACAGTTTGCCGC
AGTACGGACGGACACCCAATTAAACGTCATCGAAGAACCAATTAGTTTTCTCGTCAAACCCGCCGATGACCTGCTCCCCT
CACCCTACGCCACACTCATCACCGGGATCACTCCGCAACACGCACAACGTGAAGGCATCAATGAAGCAGCAGCCTTCGCG
CACATTGCAATGCAGATGACACAACCACACACCTGCTCACTCGGCTACAACACCCTACGTTTCGACGACGAATTCATCCG
CTACGGGCTATTCCGTCACTTCTACGACCCATACGAACGCGAGTGGCGCAACGGCAATTCACGGTGGGACCTGCTGGACA
TGCTGCGACTCATGCACGCAGTACGCCCAGAAGGCATCCACTGGCCAACACGTGAAGACGGTGCCCCCTCATTCAAACTC
GAACACCTAGCCCTTGCCAACCATGCACGCGAAGGCACAGCACACGAAGCATTATCAGATGTCTATGCCACCATCAGCAT
GGCGCGTAAATTCCGCGCCGCACAACCGCGCCTCTGGAATTACGCACTGCAACTGCGTGACAAACGCTTTTGCGCCAACC
TGCTCGACATCACCTCAATACAACCAGTACTGCATATCTCACAGCGCTATCCTGCCACACAACACTGCGCCGCCGCCGTG
CTGCCACTGACCACACACCCACACATCAACAACCGCATCATTGTTTTCGACTTGAACGGCGACATAGACACACTGCTGCG
CCTGTCTGCAGAAGACATCGCCGACCACCTGTACACCCCAGCCCTGGATTTACCCGAAGGCGAGCAACGTATCCCACTGA
AAGAAGTCCACCTCAACAAAGTACCGGCCCTGATCGCCTGGAACCACCTGCGTGCATCGGACTTCACACGCCTTGGCATG
GACCCGAGCATGCTAGAAACCAAAGCGGCACAACTGCGCGCATGCGGACCAGATTTGGCCGAAAAAGTCCGCCACGTTTT
CAGCCATACCTACAACACCGCCAACGACGCTGATGCTTCACTGTACGACGGCTTCCTCACCGAAGAGGACCGCCGCCTCC
TGCCACAACTACGCGCCTCCTCTCCTGACACCTTGGTAACGTTCGAACAGCGCCTTCGCGATCCACGTCTCATCGAACTG
CTGTTCCGCTACCGCGCACGTAATTTTCCAGAAACCCTCTCTTGCGACGAACAGACACGCTGGGACACCTATCGGCGACG
CCGTCTGACCACCGACACCGGCCTATCAGAACTCACCTTCGACCAATACCACGCCCAAATTGCGGAATTACGGATAACGC
ACTCCCAAGATGCCACCAAACAGACCCTATTGGACCAACTCGCCGCCTGGGGCTCCGAACTATCCCGCACCCTATGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(7-185)

Exonuclease C-terminal (ExoI_SH3)

(206-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

40.632

99.372

0.404