Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   IUD23_RS00440 Genome accession   NZ_CP090316
Coordinates   116844..117479 (+) Length   211 a.a.
NCBI ID   WP_004085532.1    Uniprot ID   B0U1K7
Organism   Xylella fastidiosa subsp. morus strain Riv16     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 111844..122479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUD23_RS00430 (IUD23_00430) - 113282..114310 (-) 1029 WP_038229752.1 right-handed parallel beta-helix repeat-containing protein -
  IUD23_RS00435 (IUD23_00435) - 115340..116371 (+) 1032 WP_004085533.1 nitronate monooxygenase family protein -
  IUD23_RS00440 (IUD23_00440) dinR/lexA 116844..117479 (+) 636 WP_004085532.1 transcriptional repressor LexA Regulator
  IUD23_RS00445 (IUD23_00445) recA 117661..118704 (+) 1044 WP_012337558.1 recombinase RecA Machinery gene
  IUD23_RS00450 (IUD23_00450) alaS 119192..121846 (+) 2655 WP_038229750.1 alanine--tRNA ligase -
  IUD23_RS00455 (IUD23_00455) csrA 121985..122200 (+) 216 WP_038229748.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23331.71 Da        Isoelectric Point: 6.3837

>NTDB_id=553551 IUD23_RS00440 WP_004085532.1 116844..117479(+) (dinR/lexA) [Xylella fastidiosa subsp. morus strain Riv16]
MSLSDIQQAILSLITNHINADGVSPSQTEIARAFGFKGVRAVQHHLDVLEQQGMIRRVPGQARGIRLKHLTQVDEAALAL
QSEDVLRLPVLGRVAAGQPIGADIGEDRVVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTHDAHSGQIVVAR
IDDEITVKLLKISKDRIRLLPRNPDFAPIEVRSDQDFAIEGLYCGLLRPNR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=553551 IUD23_RS00440 WP_004085532.1 116844..117479(+) (dinR/lexA) [Xylella fastidiosa subsp. morus strain Riv16]
ATGAGTTTGAGCGATATTCAGCAGGCAATCCTGTCATTGATTACCAACCACATCAACGCTGATGGCGTTTCTCCTTCGCA
GACGGAGATCGCGCGTGCATTCGGCTTCAAAGGGGTTCGCGCGGTGCAGCATCACCTTGATGTATTGGAGCAACAGGGGA
TGATTCGCCGCGTCCCTGGACAAGCGCGTGGCATCCGGTTGAAGCATCTTACTCAGGTGGATGAGGCTGCGTTAGCTTTG
CAGAGTGAGGATGTGTTGCGCTTGCCAGTGCTCGGCCGCGTTGCGGCTGGTCAGCCGATCGGTGCTGATATCGGTGAGGA
TCGCGTGGTGTTGTTGGATCGTGTGTTCTTCTCCCCAGCACCGGATTATCTGTTGAGGGTGCAAGGTGATTCGATGCGCG
ATGAAGGAATTTTCGATGGTGATTTGATCGGCGTACATCGTACGCATGATGCGCATTCTGGACAAATTGTGGTGGCGCGC
ATTGATGATGAGATTACCGTCAAATTGTTGAAGATTAGTAAAGACCGGATTCGTTTGCTACCGCGTAATCCTGACTTTGC
ACCGATTGAGGTGAGGTCAGATCAGGATTTCGCCATTGAGGGATTGTATTGCGGCTTGCTGCGCCCCAACCGGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(2-64)

Peptidase S24-like (Peptidase_S24)

(89-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0U1K7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.799

99.052

0.374