Detailed information NTG0553460

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LVJ26_RS22085
• Genome accession: NZ_CP090212
• Coordinates: 4523766..4524791 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain BY68
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4518766..4529791

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVJ26_RS22065 (LVJ26_21970)	metJ	4519827..4520144 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LVJ26_RS22070 (LVJ26_21975)	yiiX	4520328..4520936 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
LVJ26_RS22075 (LVJ26_21980)	rpmE	4520997..4521209 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LVJ26_RS22080 (LVJ26_21985)	priA	4521412..4523610 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
LVJ26_RS22085 (LVJ26_21990)	cytR	4523766..4524791 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LVJ26_RS22090 (LVJ26_21995)	ftsN	4524883..4525842 (+)	960	WP_000068828.1	cell division protein FtsN	-
LVJ26_RS22095 (LVJ26_22000)	hslV	4525935..4526465 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LVJ26_RS22100 (LVJ26_22005)	hslU	4526475..4527806 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LVJ26_RS22105 (LVJ26_22010)	menA	4527873..4528799 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LVJ26_RS22110 (LVJ26_22015)	rraA	4528892..4529377 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LVJ26_RS22115 (LVJ26_22020)	zapB	4529462..4529707 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=553460 LVJ26_RS22085 WP_000644904.1 4523766..4524791(+) (cytR) [Escherichia coli strain BY68]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=553460 LVJ26_RS22085 WP_000644904.1 4523766..4524791(+) (cytR) [Escherichia coli strain BY68]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628