Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   J7U30_RS09280 Genome accession   NZ_CP072447
Coordinates   1866653..1868455 (+) Length   600 a.a.
NCBI ID   WP_016396185.1    Uniprot ID   A0A3G6JEL1
Organism   Lactobacillus delbrueckii subsp. lactis strain L24756     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1861653..1873455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U30_RS09265 (J7U30_09240) - 1863013..1863390 (-) 378 WP_002879494.1 hypothetical protein -
  J7U30_RS09270 (J7U30_09245) - 1863509..1864648 (-) 1140 WP_138490662.1 LCP family protein -
  J7U30_RS09275 (J7U30_09250) - 1865033..1866331 (+) 1299 WP_138490663.1 RNA-guided endonuclease TnpB family protein -
  J7U30_RS09280 (J7U30_09255) pepF 1866653..1868455 (+) 1803 WP_016396185.1 oligoendopeptidase F Regulator
  J7U30_RS09285 (J7U30_09260) - 1868525..1869751 (-) 1227 WP_035165322.1 lactate oxidase -
  J7U30_RS09290 (J7U30_09265) - 1869881..1871419 (-) 1539 WP_138490664.1 L-lactate permease -
  J7U30_RS09295 - 1871672..1872082 (-) 411 WP_231520590.1 hypothetical protein -
  J7U30_RS09300 (J7U30_09275) - 1872000..1872419 (-) 420 WP_307860642.1 zinc-ribbon domain-containing protein -
  J7U30_RS09305 (J7U30_09280) - 1872474..1873271 (-) 798 WP_003621140.1 metal ABC transporter permease -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68346.08 Da        Isoelectric Point: 4.4406

>NTDB_id=553453 J7U30_RS09280 WP_016396185.1 1866653..1868455(+) (pepF) [Lactobacillus delbrueckii subsp. lactis strain L24756]
MEIPYRSEVPKEQTWDLTRVFKTEADWEDAFKAVKQEVKALPALEDGFTESAAVLYDRLTQIFAVDRRLSKIYVYASMAS
DVDTSNQKKLALNSRAQSLAAEYQAAVAFIQPAVLALGKEGLDAFFKEEPRLENYRHYLEQIVKQEEHVLPAEEEKLVSA
AGDALSASANTFNVLTNSDLQFPYIEDEDGEAVELTEANYDILIQSQNREVREDAFDALYAGYGQFASTFASTLAGNVKA
HNFDAQTHHYQDALAAALSENNIPVDVYNQLLTSVHKHLDLLHRYVNLREEILDLKGDLQMWDMYVPITGKPSLSYTFAE
AKAQAREALQVLGEDYVKHVDYLFNNRCIDHVANMHKQSGAYSGGAYDTDAYELLNWQGDLDSLYTLVHETGHSVHSMYT
RENQPYVYGDYPIFVAEIASTTNENLLTNYFLDRVTDPKTRAFLLNYYLSSFKGTVYRQTQFAEFEKFIHESDQAGEALT
ADYLCGFYDRLNQQYYGPAISLGSDIDLEWARIPHFYYNFYVYQYATGFAAATALANKITYGSQEDKEKYLDFLKSGSSD
YPINIMQKAGVDMTKSDYLEDAFKVFTERLDEFTDLIKKL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=553453 J7U30_RS09280 WP_016396185.1 1866653..1868455(+) (pepF) [Lactobacillus delbrueckii subsp. lactis strain L24756]
ATGGAAATCCCTTATCGCAGTGAGGTCCCCAAAGAGCAGACCTGGGACTTGACCCGGGTCTTCAAGACTGAGGCGGACTG
GGAGGACGCCTTTAAAGCTGTCAAGCAGGAAGTCAAGGCCCTGCCGGCCTTGGAAGACGGCTTTACGGAGAGCGCGGCCG
TCCTCTATGACCGCTTGACCCAGATTTTTGCCGTTGACCGCCGCCTGTCCAAGATCTACGTCTATGCCAGCATGGCCAGC
GACGTCGACACCAGCAACCAGAAGAAGCTGGCCCTCAATTCCCGCGCCCAGAGCCTGGCCGCTGAATACCAGGCAGCTGT
TGCCTTCATTCAGCCGGCTGTTTTAGCCTTGGGTAAAGAGGGCCTGGACGCCTTTTTCAAGGAAGAGCCAAGACTGGAAA
ACTACCGGCACTATTTGGAACAGATCGTCAAGCAGGAAGAGCACGTTTTGCCAGCTGAAGAGGAGAAGCTGGTATCGGCG
GCCGGGGATGCCCTGTCAGCTTCGGCCAACACCTTCAACGTCTTGACCAACTCCGATTTGCAATTCCCTTACATTGAAGA
TGAAGACGGGGAAGCAGTGGAACTGACGGAAGCCAACTACGACATCTTGATCCAGTCCCAGAACCGGGAAGTCAGAGAGG
ACGCCTTTGACGCCCTTTACGCTGGCTACGGCCAGTTCGCGTCAACTTTTGCCTCAACCTTGGCCGGCAATGTCAAGGCC
CACAACTTTGATGCCCAGACCCACCACTACCAGGACGCCTTAGCCGCGGCTCTGTCAGAAAACAACATCCCTGTCGACGT
CTACAATCAGCTTTTGACTAGCGTCCACAAGCACCTGGACCTCCTCCACCGCTATGTCAACTTGCGCGAAGAGATCCTGG
ACCTGAAGGGCGACCTGCAAATGTGGGACATGTACGTGCCGATCACGGGCAAGCCAAGCCTCAGCTACACTTTCGCTGAA
GCCAAGGCCCAGGCCAGAGAGGCCCTGCAGGTTTTGGGCGAGGACTATGTCAAACACGTCGACTACCTCTTCAATAACCG
CTGCATCGACCACGTGGCTAACATGCACAAGCAAAGCGGGGCCTACTCCGGCGGGGCTTATGACACCGACGCCTATGAGC
TCTTGAACTGGCAGGGGGACCTGGATTCCCTCTACACCCTGGTCCACGAGACCGGCCACTCAGTCCACAGCATGTACACC
CGGGAAAACCAGCCATACGTGTACGGGGACTATCCGATCTTTGTCGCGGAAATTGCCTCAACGACCAATGAAAACCTGCT
GACCAACTACTTCCTGGACCGGGTGACGGATCCAAAGACCCGGGCCTTCTTGCTCAACTACTACTTGAGCTCCTTTAAGG
GAACGGTCTACCGGCAGACCCAGTTCGCGGAATTCGAGAAGTTCATTCATGAAAGCGACCAGGCGGGTGAAGCCTTGACG
GCTGACTACCTGTGCGGCTTCTACGACCGGCTCAACCAGCAGTACTACGGCCCGGCGATCAGCCTGGGCAGCGACATCGA
CCTGGAATGGGCCCGGATCCCCCACTTCTATTACAACTTCTACGTCTACCAGTACGCGACCGGCTTTGCCGCGGCGACTG
CCCTGGCTAACAAGATTACTTACGGCAGCCAGGAAGACAAGGAGAAGTACCTAGACTTCCTTAAGTCCGGCTCCAGCGAC
TACCCGATCAACATCATGCAGAAGGCCGGCGTCGACATGACCAAGTCCGACTACCTGGAAGATGCCTTCAAGGTCTTTAC
GGAAAGACTGGATGAATTTACTGACTTGATCAAAAAATTGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(115-182)

Peptidase family M3 (Peptidase_M3)

(203-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G6JEL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

99

0.495