Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LVJ26_RS09045 Genome accession   NZ_CP090212
Coordinates   1866205..1867632 (-) Length   475 a.a.
NCBI ID   WP_000980563.1    Uniprot ID   -
Organism   Escherichia coli strain BY68     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1861205..1872632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ26_RS09015 (LVJ26_08970) yeeZ 1861260..1862084 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  LVJ26_RS09020 (LVJ26_08975) yeeY 1862130..1863059 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  LVJ26_RS09025 (LVJ26_08980) yoeI 1863274..1863336 (+) 63 WP_010723108.1 membrane protein YoeI -
  LVJ26_RS09030 (LVJ26_08985) plaP 1863326..1864684 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LVJ26_RS09035 (LVJ26_08990) tsuA 1864863..1865921 (+) 1059 WP_066019385.1 thiosulfate utilization transporter TsuA/YeeE -
  LVJ26_RS09040 (LVJ26_08995) tsuB 1865935..1866162 (+) 228 WP_066019384.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LVJ26_RS09045 (LVJ26_09000) sbcB 1866205..1867632 (-) 1428 WP_000980563.1 exodeoxyribonuclease I Machinery gene
  LVJ26_RS09050 (LVJ26_09005) dacD 1867841..1869007 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LVJ26_RS09055 (LVJ26_09010) sbmC 1869126..1869599 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  LVJ26_RS09060 (LVJ26_09015) yeeA 1869797..1870855 (+) 1059 WP_001200888.1 FUSC family protein -
  LVJ26_RS09065 (LVJ26_09020) tmaR 1871027..1871356 (+) 330 WP_000450409.1 DUF496 family protein -
  LVJ26_RS09070 (LVJ26_09025) - 1871457..1871639 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  LVJ26_RS09075 (LVJ26_09030) - 1871693..1871839 (+) 147 Protein_1779 transposase domain-containing protein -
  LVJ26_RS09080 (LVJ26_09035) - 1872128..1872208 (-) 81 Protein_1780 hypothetical protein -
  LVJ26_RS09085 (LVJ26_09040) yeeW 1872254..1872448 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6054

>NTDB_id=553424 LVJ26_RS09045 WP_000980563.1 1866205..1867632(-) (sbcB) [Escherichia coli strain BY68]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=553424 LVJ26_RS09045 WP_000980563.1 1866205..1867632(-) (sbcB) [Escherichia coli strain BY68]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581