Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   J7U05_RS07350 Genome accession   NZ_CP072443
Coordinates   1422872..1423603 (-) Length   243 a.a.
NCBI ID   WP_002951673.1    Uniprot ID   A0AAP2RM94
Organism   Streptococcus thermophilus strain S24724     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1417872..1428603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U05_RS07325 (J7U05_07310) - 1418921..1420102 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  J7U05_RS07335 (J7U05_07320) trmB 1420338..1420979 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  J7U05_RS07340 (J7U05_07325) ccrZ 1420989..1421780 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  J7U05_RS07345 (J7U05_07330) pptB 1421838..1422872 (-) 1035 WP_372430784.1 ABC transporter permease Regulator
  J7U05_RS07350 (J7U05_07335) pptA 1422872..1423603 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  J7U05_RS07355 (J7U05_07340) - 1423668..1424087 (+) 420 WP_011227486.1 HIT family protein -
  J7U05_RS07360 (J7U05_07345) - 1424084..1424392 (+) 309 WP_116920336.1 hypothetical protein -
  J7U05_RS07365 (J7U05_07350) - 1424434..1425165 (-) 732 WP_116920337.1 hypothetical protein -
  J7U05_RS07370 (J7U05_07355) - 1425183..1425818 (-) 636 WP_023909894.1 DUF4230 domain-containing protein -
  J7U05_RS07375 - 1425837..1425962 (-) 126 WP_259699999.1 hypothetical protein -
  J7U05_RS07380 (J7U05_07360) - 1426372..1428471 (-) 2100 WP_116920338.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26830.05 Da        Isoelectric Point: 4.4606

>NTDB_id=553409 J7U05_RS07350 WP_002951673.1 1422872..1423603(-) (pptA) [Streptococcus thermophilus strain S24724]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=553409 J7U05_RS07350 WP_002951673.1 1422872..1423603(-) (pptA) [Streptococcus thermophilus strain S24724]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTATGCCAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGCGCCTTTATTGTCAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

100

100

1
  pptA Streptococcus salivarius strain HSISS4

97.119

100

0.971