Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   J7U05_RS02270 Genome accession   NZ_CP072443
Coordinates   415826..416269 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24724     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 410826..421269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U05_RS02250 (J7U05_02250) - 411350..412102 (-) 753 WP_011680801.1 NUDIX hydrolase -
  J7U05_RS02255 (J7U05_02255) - 412166..413272 (-) 1107 WP_116920122.1 AAA family ATPase -
  J7U05_RS02260 (J7U05_02260) gdhA 413616..414968 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  J7U05_RS02265 (J7U05_02265) - 415226..415636 (+) 411 WP_011680804.1 peptide deformylase -
  J7U05_RS02270 (J7U05_02270) rcrR 415826..416269 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  J7U05_RS02275 (J7U05_02275) - 416273..418087 (+) 1815 Protein_387 ABC transporter ATP-binding protein -
  J7U05_RS02280 (J7U05_02280) rcrQ 418077..419855 (+) 1779 WP_023909433.1 ABC transporter ATP-binding protein Regulator
  J7U05_RS02285 (J7U05_02285) - 420011..420268 (+) 258 WP_224107491.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=553382 J7U05_RS02270 WP_002945408.1 415826..416269(+) (rcrR) [Streptococcus thermophilus strain S24724]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=553382 J7U05_RS02270 WP_002945408.1 415826..416269(+) (rcrR) [Streptococcus thermophilus strain S24724]
ATGCATGGAAAAGATCCCTTTAGTGACTTCAGAGAATTTATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTTTCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537