Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LXN07_RS09215 Genome accession   NZ_CP090196
Coordinates   1968064..1969491 (-) Length   475 a.a.
NCBI ID   WP_072198855.1    Uniprot ID   -
Organism   Escherichia coli strain YL3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1963064..1974491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN07_RS09185 (LXN07_09180) yeeZ 1963126..1963950 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  LXN07_RS09190 (LXN07_09185) yeeY 1963996..1964925 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  LXN07_RS09195 (LXN07_09190) yoeI 1965140..1965202 (+) 63 WP_010723108.1 membrane protein YoeI -
  LXN07_RS09200 (LXN07_09195) plaP 1965192..1966550 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LXN07_RS09205 (LXN07_09200) tsuA 1966729..1967787 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  LXN07_RS09210 (LXN07_09205) tsuB 1967801..1968021 (+) 221 Protein_1816 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LXN07_RS09215 (LXN07_09210) sbcB 1968064..1969491 (-) 1428 WP_072198855.1 exodeoxyribonuclease I Machinery gene
  LXN07_RS09220 (LXN07_09215) dacD 1969700..1970866 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LXN07_RS09225 (LXN07_09220) sbmC 1970985..1971458 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  LXN07_RS09230 (LXN07_09225) yeeA 1971656..1972714 (+) 1059 WP_001200891.1 FUSC family protein -
  LXN07_RS09235 (LXN07_09230) tmaR 1972886..1973215 (+) 330 WP_000450409.1 DUF496 family protein -
  LXN07_RS09240 (LXN07_09235) - 1973316..1973498 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  LXN07_RS09245 (LXN07_09240) - 1973570..1973698 (+) 129 Protein_1823 transposase domain-containing protein -
  LXN07_RS09250 (LXN07_09245) - 1973987..1974079 (-) 93 Protein_1824 DUF957 domain-containing protein -
  LXN07_RS09255 (LXN07_09250) yeeW 1974113..1974307 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.80 Da        Isoelectric Point: 5.6070

>NTDB_id=553340 LXN07_RS09215 WP_072198855.1 1968064..1969491(-) (sbcB) [Escherichia coli strain YL3]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=553340 LXN07_RS09215 WP_072198855.1 1968064..1969491(-) (sbcB) [Escherichia coli strain YL3]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579